Papers: 10.3390/cancers12040948
https://doi.org/10.3390/cancers12040948
Reconstruction of Ewing Sarcoma Developmental Context from Mass-Scale Transcriptomics Reveals Characteristics of EWSR1-FLI1 Permissibility
Cited by: 23
Author(s): Henry E. Miller, Aparna Gorthi, Nicklas Bassani, Liesl A. Lawrence, Brian S. Iskra, Alexander J.R. Bishop
Published: over 5 years ago
Software Mentions 19
bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome rangesPapers that mentioned: 145
Very Likely Science (76)
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics dataPapers that mentioned: 2,223
Very Likely Science (75)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
Very Likely Science (100)
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataPapers that mentioned: 217
Very Likely Science (100)
bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq dataPapers that mentioned: 261
Very Likely Science (100)
Very Likely Science (100)
Very Likely Science (95)
Very Likely Science (75)
cran: matrixStats
Functions that Apply to Rows and Columns of Matrices (and to Vectors)Papers that mentioned: 46
Very Likely Science (75)
cran: msigdbr
MSigDB Gene Sets for Multiple Organisms in a Tidy Data FormatPapers that mentioned: 17
Very Likely Science (95)
cran: phateR
PHATE - Potential of Heat-Diffusion for Affinity-Based Transition EmbeddingPapers that mentioned: 4
Very Likely Science (83)
Very Likely Science (100)
cran: uwot
The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality ReductionPapers that mentioned: 17
Very Likely Science (100)
Very Likely Science (75)
Very Likely Science (65)
Very Likely Science (80)
Very Likely Science (90)
Very Likely Science (90)
Very Likely Science (100)