Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.3390/cancers12040948
https://doi.org/10.3390/cancers12040948
Cited by: 23
Author(s): Henry E. Miller, Aparna Gorthi, Nicklas Bassani, Liesl A. Lawrence, Brian S. Iskra, Alexander J.R. Bishop
Published: about 4 years ago
Software Mentions 19
bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome rangesPapers that mentioned: 145
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics dataPapers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: DiffBind
Differential Binding Analysis of ChIP-Seq Peak DataPapers that mentioned: 217
bioconductor: EBSeq
An R package for gene and isoform differential expression analysis of RNA-seq dataPapers that mentioned: 261
cran: matrixStats
Functions that Apply to Rows and Columns of Matrices (and to Vectors)Papers that mentioned: 46
cran: msigdbr
MSigDB Gene Sets for Multiple Organisms in a Tidy Data FormatPapers that mentioned: 17
cran: phateR
PHATE - Potential of Heat-Diffusion for Affinity-Based Transition EmbeddingPapers that mentioned: 4
cran: uwot
The Uniform Manifold Approximation and Projection (UMAP) Method for Dimensionality ReductionPapers that mentioned: 17