Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: regex

https://packages.ecosyste.ms/registries/pypi.org/packages/regex

Alternative regular expression module, to replace re.
337 versions
Latest release: about 1 year ago
923 dependent packages
40,864,935 downloads last month

Papers Mentioning regex 18

Reconstruction of Ewing Sarcoma Developmental Context from Mass-Scale Transcriptomics Reveals Characteristics of EWSR1-FLI1 Permissibility
Cited by: 23
Author(s): Henry E. Miller, Aparna Gorthi, Nicklas Bassani, Liesl A. Lawrence, Brian S. Iskra, Alexander J.R. Bishop
Software Mentions: 19
Published: over 4 years ago

10.1371/journal.pcbi.1008605

Machine learning based CRISPR gRNA design for therapeutic exon skipping
Cited by: 5
Author(s): Wilson Louie, Max W. Shen, Zakir Tahiry, Sophia Zhang, Daniel Worstell, Christopher A. Cassa, Richard I. Sherwood, David K. Gifford
Software Mentions: 8
Published: almost 4 years ago

10.1186/s12864-017-4268-3

GHOST: global hepatitis outbreak and surveillance technology
Cited by: 32
Author(s): Atkinson G. Longmire, Seth Sims, Inna Rytsareva, David S. Campo, Pavel Skums, Zoya Dimitrova, Sumathi Ramachandran, Magdalena Medrzycki, Hong Thai, Lilia Ganova-Raeva, Yulin Lin, Lili Punkova, Amanda Sue, Massimo Mirabito, Silver Wang, Robin Tracy, Victor Bolet, Thom Sukalac, Chris Lynberg, Yury Khudyakov
Software Mentions: 7
Published: almost 7 years ago

10.1371/journal.ppat.1009304

Distinct clonal lineages and within-host diversification shape invasive Staphylococcus epidermidis populations
Cited by: 39
Author(s): Anna Both, Jia-Bin Huang, Minyue Qi, Christian Lausmann, Samira Weißelberg, Henning Büttner, Susanne Lezius, Antonio Virgilio Failla, Coralie Martin, Marc Stegger, Thorsten Gehrke, Sharmin Baig, Mustafa Citak, Malik Alawi, Martin Aepfelbacher, Holger Rohde
Software Mentions: 6
Published: over 3 years ago

10.7554/eLife.71393

Binding affinity landscapes constrain the evolution of broadly neutralizing anti-influenza antibodies
Cited by: 18
Author(s): Angela M Phillips, Katherine R. Lawrence, Alief Moulana, Thomas Dupic, Jeffrey S. Chang, Milo S. Johnson, Ivana Cvijović, Thierry Mora, Aleksandra M. Walczak, Michael M. Desai
Software Mentions: 5
Published: about 3 years ago

10.3389/fmicb.2017.00773

The 25–26 nt Small RNAs in Phytophthora parasitica Are Associated with Efficient Silencing of Homologous Endogenous Genes
Cited by: 28
Author(s): Jinbu Jia, Wenqin Lu, Chengcheng Zhong, Ran Zhou, Junjie Xu, Wei Liu, Xiuhong Gou, Qinhu Wang, Junliang Yin, Changwu Xu, Weixing Shan
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-021-94897-9

TrendyGenes, a computational pipeline for the detection of literature trends in academia and drug discovery
Cited by: 3
Author(s): Guillermo Serrano Nájera, David Narganes Carlón, Daniel Crowther
Software Mentions: 3
Published: over 3 years ago

10.3389/fpls.2018.01438

Respective Contributions of URT1 and HESO1 to the Uridylation of 5′ Fragments Produced From RISC-Cleaved mRNAs
Cited by: 16
Author(s): Hélène Zuber, Hélène Scheer, Anne-Caroline Joly, Dominique Gagliardi
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0008597

Recombination and Its Impact on the Genome of the Haplodiploid Parasitoid Wasp Nasonia
Cited by: 64
Author(s): Oliver Niehuis, Joshua D. Gibson, Michael S. Rosenberg, Bart A. Pannebakker, Tosca Koevoets, A. K. Judson, Christopher A. Desjardins, Kathleen Kennedy, David Duggan, Leo W. Beukeboom, Louis van de Zande, David M. Shuker, John H. Werren, Juergen Gadau
Software Mentions: 2
Published: almost 15 years ago

10.1186/1472-6947-15-S2-S5

SNOMED CT in a language isolate: an algorithm for a semiautomatic translation
Cited by: 13
Author(s): Olatz Perez-de-Viñaspre, Maite Oronoz
Software Mentions: 1
Published: over 9 years ago

10.3389/fpubh.2021.697501

Measuring the Value of a Practical Text Mining Approach to Identify Patients With Housing Issues in the Free-Text Notes in Electronic Health Record: Findings of a Retrospective Cohort Study
Cited by: 5
Author(s): Elham Hatef, Gurmehar S. Deol, Masoud Rouhizadeh, Ashley Li, Katyusha Eibensteiner, Craig B. Monsen, Roman Bratslaver, Margaret Senese, Hadi Kharrazi
Software Mentions: 1
Published: about 3 years ago

10.1371/journal.pone.0233746

Text mining of online job advertisements to identify direct discrimination during job hunting process: A case study in Indonesia
Cited by: 10
Author(s): Panggih Kusuma Ningrum, Tatdow Pansombut, Attachai Ueranantasun
Software Mentions: 1
Published: over 4 years ago

10.1186/s13326-021-00243-3

ResidueFinder: extracting individual residue mentions from protein literature
Cited by: 0
Author(s): Ton E Becker, Eric Jakobsson
Software Mentions: 1
Published: over 3 years ago

10.3390/jcm8070999

Exploration of Artificial Intelligence Use with ARIES in Multiple Myeloma Research
Cited by: 8
Author(s): Sophia Loda, Jonathan Krebs, Sophia Danhof, Martin Schreder, Antonio Giovanni Solimando, Susanne Strifler, Leo Rasche, Martin Kortüm, Alexander Kerscher, Stefan Knop, Frank Puppe, Hermann Einsele, Max Bittrich
Software Mentions: 1
Published: over 5 years ago

10.1016/j.mex.2020.101004

Extracting the characteristics of life cycle assessments via data mining
Cited by: 1
Author(s): Nancy Diaz-Elsayed, Q. Zhang
Software Mentions: 1
Published: almost 5 years ago

10.1186/s13059-016-1044-7

Gene name errors are widespread in the scientific literature
Cited by: 117
Author(s): Mark Ziemann, Yotam Eren, Assam El‐Osta
Software Mentions: 1
Published: about 8 years ago

10.1371/journal.pone.0167727

GlycCompSoft: Software for Automated Comparison of Low Molecular Weight Heparins Using Top-Down LC/MS Data.
Cited by: 10
Author(s): Xiaohua Wang, Xinyue Liu, Lingyun Li, Fuming Zhang, Min Hu, Fuji Ren, Lianli Chi, Robert J. Linhardt
Software Mentions: 1
Published: almost 9 years ago

10.3389/fimmu.2021.639672

Comprehensive Analysis of CDR3 Sequences in Gluten-Specific T-Cell Receptors Reveals a Dominant R-Motif and Several New Minor Motifs
Cited by: 19
Author(s): Shiva Dahal‐Koirala, Louise Fremgaard Risnes, Ralf Stefan Neumann, Asbjørn Christophersen, Knut E.A. Lundin, Geir Kjetil Sandve, Shuo‐Wang Qiao, Ludvig M. Sollid
Software Mentions: 1
Published: over 3 years ago