Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13072-018-0230-0

https://doi.org/10.1186/s13072-018-0230-0

CpG binding protein (CFP1) occupies open chromatin regions of active genes, including enhancers and non-CpG islands

Cited by: 19
Author(s): Louie N. van de Lagemaat, Maria Flenley, Magnus Lynch, David Garrick, Simon R. Tomlinson, Kamil R. Kranc, Douglas Vernimmen
Published: about 6 years ago

Software Mentions 5

bioconductor: ChIPpeakAnno
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments or any experiments resulted in large number of chromosome ranges
Papers that mentioned: 145
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: homer
Configuration manager for network devices
Papers that mentioned: 26
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203