Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1128/mBio.00034-20

https://doi.org/10.1128/mBio.00034-20

Proposal of a Taxonomic Nomenclature for the Bacillus cereus Group Which Reconciles Genomic Definitions of Bacterial Species with Clinical and Industrial Phenotypes

Cited by: 98
Author(s): Laura M. Carroll, Martin Wiedmann, Jasna Kovač
Published: over 4 years ago

Software Mentions 15

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: dendextend
Extending 'dendrogram' Functionality in R
Papers that mentioned: 201
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: phangorn
Phylogenetic Reconstruction and Analysis
Papers that mentioned: 192
cran: phylobase
Base Package for Phylogenetic Structures and Comparative Data
Papers that mentioned: 29
cran: phytools
Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: phytools
Useful tools for physicists.
Papers that mentioned: 586
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92