cran: phylobase | Projects | Ecosyste.ms: Papers

10.1038/s41598-020-71344-9

Twentieth-century emergence of antimicrobial resistant human- and bovine-associated Salmonella enterica serotype Typhimurium lineages in New York State
Cited by: 9
Author(s): Laura M. Carroll, Jana S. Huisman
Software Mentions: 17
Published: about 4 years ago

10.3389/fmicb.2020.580691

No Assembly Required: Using BTyper3 to Assess the Congruency of a Proposed Taxonomic Framework for the Bacillus cereus Group With Historical Typing Methods
Cited by: 20
Author(s): Laura M. Carroll, Rachel A. Cheng, Jasna Kovač
Software Mentions: 15
Published: about 4 years ago

10.1128/mBio.00034-20

Proposal of a Taxonomic Nomenclature for the Bacillus cereus Group Which Reconciles Genomic Definitions of Bacterial Species with Clinical and Industrial Phenotypes
Cited by: 98
Author(s): Laura M. Carroll, Martin Wiedmann, Jasna Kovač
Software Mentions: 15
Published: over 4 years ago

10.1098/rspb.2021.0552

Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome
Cited by: 9
Author(s): Xavier A. Harrison, Allan D. McDevitt, Jenny C. Dunn, Sarah M. Griffiths, Chiara Benvenuto, Richard Birtles, Jean P. Boubli, Kevin Bown, Calum Bridson, Darren R. Brooks, Samuel S. Browett, Ruth F. Carden, Julian Chantrey, Friederike Clever, Ilaria Coscia, Katie L. Edwards, Nicolas Ferry, Ian Goodhead, Andrew Highlands, Jane Hopper, Joseph A. Jackson, Robert Jehle, Mariane da Cruz Kaizer, Tony King, Jessica M. D. Lea, Jessica L Lenka, Alexandra McCubbin, Jack McKenzie, Bárbara Lins Caldas de Moraes, Denise O'Meara, Poppy Pescod, Richard F. Preziosi, Jennifer K. Rowntree, Susanne Shultz, Matthew J. Silk, Jennifer E. Stockdale, William O. C. Symondson, Mariana Villalba de la Peña, Susan L. Walker, Michael D. Wood, Rachael E. Antwis
Software Mentions: 14
Published: over 3 years ago

10.3390/tropicalmed5020064

Disease Ecology of Rickettsial Species: A Data Science Approach
Cited by: 6
Author(s): Sergé Morand, Kittipong Chaisiri, Anamika Kritiyakan, Rawadee Kumlert
Software Mentions: 13
Published: over 4 years ago

10.3389/fmicb.2019.00144

Characterization of Emetic and Diarrheal Bacillus cereus Strains From a 2016 Foodborne Outbreak Using Whole-Genome Sequencing: Addressing the Microbiological, Epidemiological, and Bioinformatic Challenges
Cited by: 70
Author(s): Laura M. Carroll, Manjarí Mukherjee, David Nicholas, Lisa A. Mingle, Nellie B. Dumas, Jocelyn A. Cole, Jasna Kovač
Software Mentions: 12
Published: almost 6 years ago

10.1111/mec.13636

Escape from the cryptic species trap: lichen evolution on both sides of a cyanobacterial acquisition event
Cited by: 34
Author(s): Kevin Schneider, Philipp Resl, Toby Spribille
Software Mentions: 11
Published: over 8 years ago

10.1371/journal.pone.0138031

The Effect of Host-Plant Phylogenetic Isolation on Species Richness, Composition and Specialization of Insect Herbivores: A Comparison between Native and Exotic Hosts
Cited by: 16
Author(s): Julio Miguel Grandez-Rios, Leonardo Lima Bergamini, Walter Santos de Araújo, Fabricio Villalobos, Mário Almeida‐Neto
Software Mentions: 10
Published: about 9 years ago

10.3389/fmicb.2020.557253

Sixty-One Volatiles Have Phylogenetic Signals Across Bacterial Domain and Fungal Kingdom
Cited by: 16
Author(s): Moamen M. Elmassry, Mohamed A. Farag, Robert Preißner, Björn-Oliver Gohlke, Birgit Piechulla, Marie Chantal Lemfack
Software Mentions: 9
Published: about 4 years ago

10.1155/2014/851425

Large-Scale Genomic Analysis of Codon Usage in Dengue Virus and Evaluation of Its Phylogenetic Dependence
Cited by: 22
Author(s): Edgar E. Lara-Ramírez, Ma Isabel Salazar, María de Jesús López-López, Juan Santiago Salas-Benito, Alejandro Sánchez-Varela, Xianwu Guo
Software Mentions: 7
Published: almost 11 years ago

10.1186/1471-2148-14-79

Do pre- and post-copulatory sexually selected traits covary in large herbivores?
Cited by: 18
Author(s): Mariona Ferrandiz‐Rovira, Jean‐François Lemaître, Sophie Lardy, Bernat Claramunt López, Aurélie Cohas
Software Mentions: 7
Published: over 10 years ago

10.1002/ece3.1456

Explaining forest productivity using tree functional traits and phylogenetic information: two sides of the same coin over evolutionary scale?
Cited by: 33
Author(s): Alain Paquette, Simon Joly, Christian Messier
Software Mentions: 7
Published: over 9 years ago

10.1186/s12862-016-0728-7

Evolution of the locomotory system in eels (Teleostei: Elopomorpha)
Cited by: 7
Author(s): Cathrin Pfaff, Roberto Zorzin, Jürgen Kriwet
Software Mentions: 7
Published: over 8 years ago

10.1038/s41598-018-37106-4

Carnivoran hunting style and phylogeny reflected in bony labyrinth morphometry
Cited by: 14
Author(s): Julia A. Schwab, Jürgen Kriwet, Gerhard Weber, Cathrin Pfaff
Software Mentions: 6
Published: almost 6 years ago

10.3389/fmicb.2018.02619

Stochastic and Deterministic Effects of a Moisture Gradient on Soil Microbial Communities in the McMurdo Dry Valleys of Antarctica
Cited by: 37
Author(s): Kevin C. Lee, Tancredi Caruso, Stephen Archer, Len N. Gillman, Maggie C. Y. Lau, S. Craig Cary, Charles K. Lee, Stephen B. Pointing
Software Mentions: 6
Published: about 6 years ago

10.1093/molbev/msab081

A Comprehensive Phylogenetic Analysis of the Serpin Superfamily
Cited by: 32
Author(s): Matthew A. Spence, Matthew D. Mortimer, Ashley M. Buckle, Bùi Quang Minh, C.J. Jackson
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0104787

Relationship between Phylogeny and Immunity Suggests Older Caribbean Coral Lineages Are More Resistant to Disease
Cited by: 36
Author(s): H C Jorge Pinzón, Joshuah Beach-Letendre, Ernesto Weil, Laura D. Mydlarz
Software Mentions: 5
Published: over 10 years ago

10.1186/s13104-016-2340-8

treeman: an R package for efficient and intuitive manipulation of phylogenetic trees
Cited by: 16
Author(s): Dominic J. Bennett, Mark D. Sutton, Samuel T. Turvey
Software Mentions: 5
Published: almost 8 years ago

10.1128/mSphere.00550-17

Convergent Evolution Driven by Rifampin Exacerbates the Global Burden of Drug-Resistant Staphylococcus aureus
Cited by: 47
Author(s): Romain Guérillot, Anders Gonçalves da Silva, Ian R. Monk, Stefano Giulieri, Takehiro Tomita, Eloise Alison, Jessica L. Porter, Sacha J. Pidot, Wei Gao, Anton Y. Peleg, Torsten Seemann, Timothy P. Stinear, Benjamin P Howden
Software Mentions: 4
Published: over 6 years ago

10.1186/s12864-020-6760-4

Intron and gene size expansion during nervous system evolution
Cited by: 30
Author(s): Matthew J. McCoy, Andrew Fire
Software Mentions: 4
Published: over 4 years ago

10.1186/s13104-021-05455-5

Phylogenetic signal in floral temperature patterns
Cited by: 3
Author(s): Sean A. Rands, Michael Harrap
Software Mentions: 4
Published: almost 4 years ago

10.1002/ece3.5303

Parthenogenetic <i>vs</i>. sexual reproduction in oribatid mite communities
Cited by: 24
Author(s): Mark Maraun, Tancredi Caruso, Jonathan Hense, Ricarda Lehmitz, Levan Mumladze, Maka Murvanidze, Ioana Nae, Julia Schulz, Anna Seniczak, Stefan Scheu
Software Mentions: 4
Published: over 5 years ago

10.1093/sysbio/syz080

The Implications of Lineage-Specific Rates for Divergence Time Estimation
Cited by: 15
Author(s): Tom Carruthers, Michael J. Sanderson, Robert W. Scotland
Software Mentions: 4
Published: almost 5 years ago

10.1002/ece3.2051

phylosignal: an R package to measure, test, and explore the phylogenetic signal
Cited by: 327
Author(s): François Keck, Frédéric Rimet, Agnès Bouchez, Alain Franc
Software Mentions: 3
Published: over 8 years ago

10.1002/ece3.1953

Decoupled genomic elements and the evolution of partner quality in nitrogen‐fixing rhizobia
Cited by: 13
Author(s): Benjamin R. Gordon, Christie R. Klinger, Dylan J. Weese, Jennifer A. Lau, Patricia V. Burke, Bryn T. M. Dentinger, Katy D. Heath
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pone.0067463

Trypanosoma cruzi Infection in Neotropical Wild Carnivores (Mammalia: Carnivora): At the Top of the T. cruzi Transmission Chain
Cited by: 71
Author(s): Fabiana Lopes Rocha, André Luiz Rodrigues Roque, Juliane Saab de Lima, Carolina Carvalho Cheida, Frederico Gemesio Lemos, Fernanda Cavalcanti de Azevedo, Ricardo Corassa Arrais, Daniele Bilac, Heitor Miraglia Herrera, Guilherme Mourão, Ana María Jansen
Software Mentions: 3
Published: over 11 years ago

10.1186/s12898-016-0099-3

Loss and conservation of evolutionary history in the Mediterranean Basin
Cited by: 11
Author(s): Simon Véron, Philippe Clergeau, Sandrine Pavoine
Software Mentions: 2
Published: about 8 years ago

10.3389/fpls.2020.588550

Plant Salinity Tolerance Conferred by Arbuscular Mycorrhizal Fungi and Associated Mechanisms: A Meta-Analysis
Cited by: 40
Author(s): Khondoker M. G. Dastogeer, Mst Ishrat Zahan, Md. Tahjib‐Ul‐Arif, Masuda Akter, Shin Okazaki
Software Mentions: 2
Published: almost 4 years ago

10.1002/phy2.48

Endocrine rhythms in the brown bear (<i>Ursus arctos</i>): Evidence supporting selection for decreased pineal gland size
Cited by: 11
Author(s): Jasmine V. Ware, O. Lynne Nelson, Charles T. Robbins, Patrick A. Carter, Brice A. J. Sarver, Heiko T. Jansen
Software Mentions: 1
Published: over 11 years ago

Ecosyste.ms: Papers

Projects: cran: phylobase

Papers Mentioning phylobase 29