Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-020-71344-9

https://doi.org/10.1038/s41598-020-71344-9

Twentieth-century emergence of antimicrobial resistant human- and bovine-associated Salmonella enterica serotype Typhimurium lineages in New York State

Cited by: 9
Author(s): Laura M. Carroll, Jana S. Huisman
Published: over 4 years ago

Software Mentions 17

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
bioconductor: treeio
Base Classes and Functions for Phylogenetic Tree Input and Output
Papers that mentioned: 32
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: phylobase
Base Package for Phylogenetic Structures and Comparative Data
Papers that mentioned: 29
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
cran: shiny
Web Application Framework for R
Papers that mentioned: 127
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: cluster

Papers that mentioned: 416
pypi: create
a simple package
Papers that mentioned: 9
pypi: plyr
UNKNOWN
Papers that mentioned: 468
pypi: shiny
A web development framework for Python.
Papers that mentioned: 127
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
pypi: treeio
A pure python parser for tree data format IO
Papers that mentioned: 32