Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1098/rspb.2021.0552

https://doi.org/10.1098/rspb.2021.0552

Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome

Cited by: 9
Author(s): Xavier A. Harrison, Allan D. McDevitt, Jenny C. Dunn, Sarah M. Griffiths, Chiara Benvenuto, Richard Birtles, Jean P. Boubli, Kevin Bown, Calum Bridson, Darren R. Brooks, Samuel S. Browett, Ruth F. Carden, Julian Chantrey, Friederike Clever, Ilaria Coscia, Katie L. Edwards, Nicolas Ferry, Ian Goodhead, Andrew Highlands, Jane Hopper, Joseph A. Jackson, Robert Jehle, Mariane da Cruz Kaizer, Tony King, Jessica M. D. Lea, Jessica L Lenka, Alexandra McCubbin, Jack McKenzie, Bárbara Lins Caldas de Moraes, Denise O'Meara, Poppy Pescod, Richard F. Preziosi, Jennifer K. Rowntree, Susanne Shultz, Matthew J. Silk, Jennifer E. Stockdale, William O. C. Symondson, Mariana Villalba de la Peña, Susan L. Walker, Michael D. Wood, Rachael E. Antwis
Published: about 3 years ago

Software Mentions 14

bioconductor: bioDist
Different distance measures
Papers that mentioned: 15
bioconductor: microbiome
Microbiome Analytics
Papers that mentioned: 114
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: brms
Bayesian Regression Models using 'Stan'
Papers that mentioned: 316
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: phylobase
Base Package for Phylogenetic Structures and Comparative Data
Papers that mentioned: 29
cran: phylosignal
Exploring the Phylogenetic Signal in Continuous Traits
Papers that mentioned: 39
cran: tidybayes
Tidy Data and 'Geoms' for Bayesian Models
Papers that mentioned: 21
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: ggplot
ggplot for python
Papers that mentioned: 796
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: microbiome
Papers that mentioned: 114