Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: bioDist
https://packages.ecosyste.ms/registries/bioconductor.org/packages/bioDist
Different distance measures
1 version
Latest release: 12 months ago
2 dependent packages
84,682 downloads total
Papers Mentioning bioDist 15
10.1186/s12864-017-4353-7
DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanismCited by: 72
Author(s): Ali Sharifi-Zarchi, Daniela Gerovska, Kenjiro Adachi, Mehdi Totonchi, Hamid Pezeshk, Ryan J. Taft, Hans R. Schöler, Hamidreza Chitsaz, Mehdi Sadeghi, Hossein Baharvand, Marcos J. Araúzo-Bravo
Software Mentions: 21
Published: almost 7 years ago
10.1098/rspb.2021.0552
Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiomeCited by: 9
Author(s): Xavier A. Harrison, Allan D. McDevitt, Jenny C. Dunn, Sarah M. Griffiths, Chiara Benvenuto, Richard Birtles, Jean P. Boubli, Kevin Bown, Calum Bridson, Darren R. Brooks, Samuel S. Browett, Ruth F. Carden, Julian Chantrey, Friederike Clever, Ilaria Coscia, Katie L. Edwards, Nicolas Ferry, Ian Goodhead, Andrew Highlands, Jane Hopper, Joseph A. Jackson, Robert Jehle, Mariane da Cruz Kaizer, Tony King, Jessica M. D. Lea, Jessica L Lenka, Alexandra McCubbin, Jack McKenzie, Bárbara Lins Caldas de Moraes, Denise O'Meara, Poppy Pescod, Richard F. Preziosi, Jennifer K. Rowntree, Susanne Shultz, Matthew J. Silk, Jennifer E. Stockdale, William O. C. Symondson, Mariana Villalba de la Peña, Susan L. Walker, Michael D. Wood, Rachael E. Antwis
Software Mentions: 14
Published: about 3 years ago
10.3389/fgene.2020.580580
Global Analysis of Transcription Start Sites in the New Ovine Reference Genome (Oar rambouillet v1.0)Cited by: 20
Author(s): Mazdak Salavati, Alex Caulton, Richard Clark, Iveta Gažová, Timothy P. L. Smith, Kim C. Worley, Noelle E. Cockett, Alan Archibald, Shannon Clarke, Brenda M. Murdoch, Emily L. Clark
Software Mentions: 11
Published: almost 4 years ago
10.1038/s41598-019-53342-8
Mixed-Cropping Between Field Pea Varieties Alters Root Bacterial and Fungal CommunitiesCited by: 12
Author(s): Anthony A. Horner, Samuel S. Browett, Rachael E. Antwis
Software Mentions: 8
Published: almost 5 years ago
10.1371/journal.pone.0007225
MicroRNAs Show Mutually Exclusive Expression Patterns in the Brain of Adult Male RatsCited by: 94
Author(s): Line Olsen, Mikkel Klausen, Lone Helboe, Finn Cilius Nielsen, Thomas Werge
Software Mentions: 7
Published: about 15 years ago
10.1186/1471-2105-13-S16-S10
A tutorial in displaying mass spectrometry-based proteomic data using heat mapsCited by: 47
Author(s): Melissa Key
Software Mentions: 6
Published: almost 12 years ago
10.1186/s12866-019-1540-5
Taxonomic features and comparisons of the gut microbiome from two edible fungus-farming termites (Macrotermes falciger; M. natalensis) harvested in the Vhembe district of Limpopo, South AfricaCited by: 13
Author(s): Stephanie L. Schnorr, Courtney A. Hofman, Shandukani R. Netshifhefhe, Frances D. Duncan, Tanvi P. Honap, Julie J. Lesnik, Cecil M. Lewis
Software Mentions: 6
Published: about 5 years ago
10.3389/fmicb.2014.00358
Demonstrating microbial co-occurrence pattern analyses within and between ecosystemsCited by: 239
Author(s): Ryan J. Williams, Adina Howe, Kirsten Hofmockel
Software Mentions: 6
Published: about 10 years ago
10.7554/eLife.48660
Stochastic cell-cycle entry and cell-state-dependent fate outputs of injury-reactivated tectal radial glia in zebrafishCited by: 13
Author(s): Song Yu, Jie He
Software Mentions: 4
Published: about 5 years ago
10.1186/1471-2407-13-58
Molecular profiling of cutaneous squamous cell carcinomas and actinic keratoses from organ transplant recipientsCited by: 79
Author(s): Liesbeth Hameetman, Suzan Commandeur, Jan Nico Bouwes Bavinck, Hermina C. Wisgerhof, Frank R. de Gruijl, Rein Willemze, Leon H.F. Mullenders, Cornelis P. Tensen, Harry Vrieling
Software Mentions: 4
Published: over 11 years ago
10.1099/mic.0.2006/000562-0
A new environmentally resistant cell type from DictyosteliumCited by: 6
Author(s): Ioannis Serafimidis, Gareth Bloomfield, Jason Skelton, Alasdair Ivens, Robert R. Kay
Software Mentions: 2
Published: over 17 years ago
10.3389/fmicb.2015.00650
Cautions about the reliability of pairwise gene correlations based on expression dataCited by: 11
Author(s): Scott Powers, Matthew DeJongh, Aaron A. Best, Nathan L. Tintle
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0136499
Genome-Wide Identification and Validation of Reference Genes in Infected Tomato Leaves for Quantitative RT-PCR AnalysesCited by: 35
Author(s): Oliver A. Müller, Jan Grau, Sabine Thieme, Heike Prochaska, Norman Adlung, Anika Sorgatz, Ulla Bonas
Software Mentions: 1
Published: about 9 years ago
10.1371/journal.pone.0105545
Do Breast Cancer Cell Lines Provide a Relevant Model of the Patient Tumor Methylome?Cited by: 21
Author(s): Leslie Cope, Mary Jo Fackler, Zoila A. Lopez‐Bujanda, Antonio C. Wolff, Kala Visvanathan, Joe W. Gray, Saraswati Sukumar, Christopher B. Umbricht
Software Mentions: 1
Published: about 10 years ago
10.1371/journal.pgen.1004651
Coexistence and Within-Host Evolution of Diversified Lineages of Hypermutable Pseudomonas aeruginosa in Long-term Cystic Fibrosis InfectionsCited by: 106
Author(s): Sofía Feliziani, Rasmus Lykke Marvig, Adela M. Luján, Alejandro J. Moyano, Julio A. Di Rienzo, Helle Krogh Johansen, Søren Molin, Andrea M. Smania
Software Mentions: 1
Published: almost 10 years ago