Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fgene.2020.580580

https://doi.org/10.3389/fgene.2020.580580

Global Analysis of Transcription Start Sites in the New Ovine Reference Genome (Oar rambouillet v1.0)

Cited by: 20
Author(s): Mazdak Salavati, Alex Caulton, Richard Clark, Iveta Gažová, Timothy P. L. Smith, Kim C. Worley, Noelle E. Cockett, Alan Archibald, Shannon Clarke, Brenda M. Murdoch, Emily L. Clark
Published: about 4 years ago

Software Mentions 11

bioconductor: bioDist
Different distance measures
Papers that mentioned: 15
bioconductor: BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs
Papers that mentioned: 47
bioconductor: CAGEfightR
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
Papers that mentioned: 6
bioconductor: GenomicFeatures
Conveniently import and query gene models
Papers that mentioned: 141
bioconductor: Gviz
Plotting data and annotation information along genomic coordinates
Papers that mentioned: 134
pypi: bash
Bash for Python
Papers that mentioned: 65
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: bs

Papers that mentioned: 6
pypi: CAGE
A generic and fairly complete cellular automata simulation engine.
Papers that mentioned: 101
pypi: house
A lib to persist blobs by their sha256
Papers that mentioned: 960
pypi: picard
The next generation MusicBrainz tagger
Papers that mentioned: 243