Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: CAGEfightR
https://packages.ecosyste.ms/registries/bioconductor.org/packages/CAGEfightR
Analysis of Cap Analysis of Gene Expression (CAGE) data using Bioconductor
1 version
Latest release: 10 months ago
1 dependent package
16,165 downloads total
Papers Mentioning CAGEfightR 6
10.12688/f1000research.18456.1
A step-by-step guide to analyzing CAGE data using R/BioconductorCited by: 10
Author(s): Malte Thodberg, Albin Sandelin
Software Mentions: 20
Published: about 5 years ago
10.1186/s12859-019-3029-5
CAGEfightR: analysis of 5′-end data using R/BioconductorCited by: 35
Author(s): Malte Thodberg, Axel Thieffry, Kristoffer Vitting-Seerup, Robin Andersson, Albin Sandelin
Software Mentions: 13
Published: almost 5 years ago
10.3389/fgene.2020.580580
Global Analysis of Transcription Start Sites in the New Ovine Reference Genome (Oar rambouillet v1.0)Cited by: 20
Author(s): Mazdak Salavati, Alex Caulton, Richard Clark, Iveta Gažová, Timothy P. L. Smith, Kim C. Worley, Noelle E. Cockett, Alan Archibald, Shannon Clarke, Brenda M. Murdoch, Emily L. Clark
Software Mentions: 11
Published: almost 4 years ago
10.1371/journal.pgen.1007969
Transcription-driven chromatin repression of Intragenic transcription start sitesCited by: 66
Author(s): Mathias Nielsen, Ryan Ard, Xueyuan Leng, Maxim Ivanov, Peter Kindgren, Vicent Pelechano, Sebastian Marquardt
Software Mentions: 3
Published: over 5 years ago
10.3389/fcell.2020.00498
The Transcriptional Network That Controls Growth Arrest and Macrophage Differentiation in the Human Myeloid Leukemia Cell Line THP-1Cited by: 22
Author(s): Iveta Gažová, Lucas Lefèvre, Stephen J. Bush, Sara Clohisey, Peter Arner, Michiel de Hoon, Jessica Severin, Lucas van Duin, Robin Andersson, Andreas Lengeling, David Hume, Kim M. Summers
Software Mentions: 2
Published: about 4 years ago
10.1128/JVI.00119-20
The African Swine Fever Virus TranscriptomeCited by: 95
Author(s): Gwenny Cackett, Dorota Matelska, Michal Sýkora, Raquel Portugal, Michał Malecki, Jürg Bähler, Linda K. Dixon, Finn Werner
Software Mentions: 2
Published: over 4 years ago