Papers: 10.1186/s12859-019-3029-5
https://doi.org/10.1186/s12859-019-3029-5
CAGEfightR: analysis of 5′-end data using R/Bioconductor
Cited by: 35
Author(s): Malte Thodberg, Axel Thieffry, Kristoffer Vitting-Seerup, Robin Andersson, Albin Sandelin
Published: almost 6 years ago
Software Mentions 13
bioconductor: CAGEfightR
Analysis of Cap Analysis of Gene Expression (CAGE) data using BioconductorPapers that mentioned: 6
Very Likely Science (100)
bioconductor: CAGEr
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome miningPapers that mentioned: 27
Very Likely Science (100)
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
Very Likely Science (100)
Very Likely Science (100)
bioconductor: DRIMSeq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seqPapers that mentioned: 17
Very Likely Science (100)
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
Very Likely Science (100)
bioconductor: GenomicInteractions
Utilities for handling genomic interaction dataPapers that mentioned: 10
Very Likely Science (100)
bioconductor: Gviz
Plotting data and annotation information along genomic coordinatesPapers that mentioned: 134
Very Likely Science (100)
bioconductor: icetea
Integrating Cap Enrichment with Transcript Expression AnalysisPapers that mentioned: 2
Very Likely Science (100)
Very Likely Science (78)
bioconductor: TSRchitect
Papers that mentioned: 2
Unlikely Science (0)
pypi: CAGE
A generic and fairly complete cellular automata simulation engine.Papers that mentioned: 101
Very Likely Science (90)
Very Likely Science (65)