Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12859-019-3029-5
https://doi.org/10.1186/s12859-019-3029-5
Cited by: 35
Author(s): Malte Thodberg, Axel Thieffry, Kristoffer Vitting-Seerup, Robin Andersson, Albin Sandelin
Published: over 4 years ago
Software Mentions 13
bioconductor: CAGEfightR
Analysis of Cap Analysis of Gene Expression (CAGE) data using BioconductorPapers that mentioned: 6
bioconductor: CAGEr
Analysis of CAGE (Cap Analysis of Gene Expression) sequencing data for precise mapping of transcription start sites and promoterome miningPapers that mentioned: 27
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: DRIMSeq
Differential transcript usage and tuQTL analyses with Dirichlet-multinomial model in RNA-seqPapers that mentioned: 17
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: GenomicInteractions
Utilities for handling genomic interaction dataPapers that mentioned: 10
bioconductor: Gviz
Plotting data and annotation information along genomic coordinatesPapers that mentioned: 134
bioconductor: icetea
Integrating Cap Enrichment with Transcript Expression AnalysisPapers that mentioned: 2
bioconductor: TSRchitect
Papers that mentioned: 2pypi: CAGE
A generic and fairly complete cellular automata simulation engine.Papers that mentioned: 101