An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s12864-017-4353-7

https://doi.org/10.1186/s12864-017-4353-7

DNA methylation regulates discrimination of enhancers from promoters through a H3K4me1-H3K4me3 seesaw mechanism

Cited by: 72
Author(s): Ali Sharifi-Zarchi, Daniela Gerovska, Kenjiro Adachi, Mehdi Totonchi, Hamid Pezeshk, Ryan J. Taft, Hans R. Schöler, Hamidreza Chitsaz, Mehdi Sadeghi, Hossein Baharvand, Marcos J. Araúzo-Bravo
Published: over 7 years ago

Software Mentions 21

bioconductor: Biobase
Biobase: Base functions for Bioconductor
Papers that mentioned: 104
Very Likely Science (75)
bioconductor: bioDist
Different distance measures
Papers that mentioned: 15
Very Likely Science (75)
bioconductor: GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
cran: directlabels
Direct Labels for Multicolor Plots
Papers that mentioned: 2
Very Likely Science (95)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
Very Likely Science (85)
cran: Hmisc
Harrell Miscellaneous
Papers that mentioned: 1,000
Very Likely Science (75)
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
Very Likely Science (75)
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
Very Likely Science (100)
cran: raster
Geographic Data Analysis and Modeling
Papers that mentioned: 561
Very Likely Science (85)
cran: reshape
Flexibly Reshape Data
Papers that mentioned: 123
Very Likely Science (83)
cran: rpart
Recursive Partitioning and Regression Trees
Papers that mentioned: 431
Very Likely Science (100)
cran: zoo
S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)
Papers that mentioned: 45
Very Likely Science (75)
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
Very Likely Science (75)
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
Very Likely Science (100)
pypi: MAnorm
A robust model for quantitative comparison of ChIP-Seq data sets
Papers that mentioned: 42
Very Likely Science (80)
pypi: multicore
Simpler Python multiprocess coding. Persistent workers, memory maps for minimum overhead.
Papers that mentioned: 2
Very Likely Science (65)
pypi: plyr
UNKNOWN
Papers that mentioned: 468
Very Likely Science (65)
pypi: reshape
The missing reshape for Python
Papers that mentioned: 123
Very Likely Science (65)
pypi: zoo
Zoo is a rpc framework for Python
Papers that mentioned: 45
Very Likely Science (65)