cran: phylosignal | Projects | Ecosyste.ms: Papers

10.1098/rspb.2021.0552

Fungal microbiomes are determined by host phylogeny and exhibit widespread associations with the bacterial microbiome
Cited by: 9
Author(s): Xavier A. Harrison, Allan D. McDevitt, Jenny C. Dunn, Sarah M. Griffiths, Chiara Benvenuto, Richard Birtles, Jean P. Boubli, Kevin Bown, Calum Bridson, Darren R. Brooks, Samuel S. Browett, Ruth F. Carden, Julian Chantrey, Friederike Clever, Ilaria Coscia, Katie L. Edwards, Nicolas Ferry, Ian Goodhead, Andrew Highlands, Jane Hopper, Joseph A. Jackson, Robert Jehle, Mariane da Cruz Kaizer, Tony King, Jessica M. D. Lea, Jessica L Lenka, Alexandra McCubbin, Jack McKenzie, Bárbara Lins Caldas de Moraes, Denise O'Meara, Poppy Pescod, Richard F. Preziosi, Jennifer K. Rowntree, Susanne Shultz, Matthew J. Silk, Jennifer E. Stockdale, William O. C. Symondson, Mariana Villalba de la Peña, Susan L. Walker, Michael D. Wood, Rachael E. Antwis
Software Mentions: 14
Published: over 3 years ago

10.3390/tropicalmed5020064

Disease Ecology of Rickettsial Species: A Data Science Approach
Cited by: 6
Author(s): Sergé Morand, Kittipong Chaisiri, Anamika Kritiyakan, Rawadee Kumlert
Software Mentions: 13
Published: over 4 years ago

10.3389/fmicb.2019.02904

Fungal Traits Important for Soil Aggregation
Cited by: 68
Author(s): Anika Lehmann, Weiguo Zheng, Masahiro Ryo, Katharina Soutschek, Julien Roy, Rebecca Rongstock, Stefanie Maaß, Matthias C. Rillig
Software Mentions: 11
Published: almost 5 years ago

10.3389/fmicb.2020.557253

Sixty-One Volatiles Have Phylogenetic Signals Across Bacterial Domain and Fungal Kingdom
Cited by: 16
Author(s): Moamen M. Elmassry, Mohamed A. Farag, Robert Preißner, Björn-Oliver Gohlke, Birgit Piechulla, Marie Chantal Lemfack
Software Mentions: 9
Published: about 4 years ago

10.1038/s41598-019-50565-7

Tradeoffs in hyphal traits determine mycelium architecture in saprobic fungi
Cited by: 14
Author(s): Anika Lehmann, Weiguo Zheng, Katharina Soutschek, Julien Roy, Andrey Yurkov, Matthias C. Rillig
Software Mentions: 9
Published: about 5 years ago

10.1093/aobpla/plab018

Alpine speciation and morphological innovations: revelations from a species-rich genus in the northern hemisphere
Cited by: 5
Author(s): Yazhou Zhang, Jianguo Chen, Hang Sun
Software Mentions: 8
Published: over 3 years ago

10.1093/database/baz098

Progress in the study of genome size evolution in Asteraceae: analysis of the last update
Cited by: 14
Author(s): Daniel Vitales, P. Fernández, Teresa Garnatje, Sònia Garcia
Software Mentions: 8
Published: almost 6 years ago

10.1128/mBio.00885-17

Pathogenicity Locus, Core Genome, and Accessory Gene Contributions to Clostridium difficile Virulence
Cited by: 42
Author(s): Brittany B. Lewis, Rebecca A. Carter, Lilan Ling, Ingrid Leiner, Ying Taur, Mini Kamboj, Erik R. Dubberke, João B. Xavier, Eric G. Pamer
Software Mentions: 7
Published: over 7 years ago

10.1093/molbev/msab079

Rubisco Adaptation Is More Limited by Phylogenetic Constraint Than by Catalytic Trade-off
Cited by: 28
Author(s): Jacques W. Bouvier, David Emms, Timothy Rhodes, Jai S Bolton, Amelia Brasnett, Alice Eddershaw, Jochem Nielsen, A Unitt, Spencer M. Whitney, Steven Kelly
Software Mentions: 6
Published: almost 4 years ago

10.7717/peerj.6597

Phylogenetic signal analysis in the basicranium of Ursidae (Carnivora, Mammalia)
Cited by: 6
Author(s): María Eugenia Arnaudo, Néstor Toledo, Leopoldo Héctor Soibelzon, Paula Bona
Software Mentions: 6
Published: almost 6 years ago

10.1002/ece3.6298

Convergent morphological responses to loss of flight in rails (Aves: Rallidae)
Cited by: 8
Author(s): Julien Gaspar, Gillian C. Gibb, Steven A. Trewick
Software Mentions: 6
Published: over 4 years ago

10.1111/mec.15538

The balance between deterministic and stochastic processes in structuring lake bacterioplankton community over time
Cited by: 39
Author(s): Pablo S. Aguilar, Rubén Sommaruga
Software Mentions: 5
Published: over 4 years ago

10.1038/s41396-020-0606-6

Genetic variation and evolutionary history of a mycorrhizal fungus regulate the currency of exchange in symbiosis with the food security crop cassava
Cited by: 12
Author(s): Romain Savary, Cindy Dupuis, Frédéric G. Masclaux, Ivan D. Mateus, Edward C. Rojas, Ian R. Sanders
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13059-020-01971-y

High-resolution modeling of the selection on local mRNA folding strength in coding sequences across the tree of life
Cited by: 22
Author(s): Michael Peeri, Tamir Tuller
Software Mentions: 5
Published: almost 5 years ago

10.1126/sciadv.aau4578

Fungal diversity regulates plant-soil feedbacks in temperate grassland
Cited by: 134
Author(s): Marina Semchenko, Jonathan W. Leff, Yudi M. Lozano, Sirgi Saar, John Davison, Anna Wilkinson, Benjamin G. Jackson, William J. Pritchard, Jonathan R. De Long, Simon Oakley, Kelly E. Mason, Nicholas J. Ostle, Elizabeth M. Baggs, David Johnson, Noah Fierer, Richard D. Bardgett
Software Mentions: 5
Published: about 6 years ago

10.1186/s13059-019-1785-1

Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center
Cited by: 21
Author(s): Matthew J. Ellington, Eva Heinz, Alexander M. Wailan, Matthew J. Dorman, Marcus C. de Goffau, Amy K. Cain, Sonal P. Henson, Nicholas Gleadall, Christine J. Boinett, Gordon Dougan, Nicholas M. Brown, Neil Woodford, Julian Parkhill, M. Estée Török, Sharon J. Peacock, Nicholas R. Thomson
Software Mentions: 4
Published: over 5 years ago

10.1186/s13104-021-05455-5

Phylogenetic signal in floral temperature patterns
Cited by: 3
Author(s): Sean A. Rands, Michael Harrap
Software Mentions: 4
Published: almost 4 years ago

10.1186/s40462-017-0117-x

Life-history strategy, resource dispersion and phylogenetic associations shape dispersal of a fig wasp community
Cited by: 9
Author(s): Vignesh Venkateswaran, Amitabh Shrivastava, Anusha L. K. Kumble, Renée M. Borges
Software Mentions: 4
Published: about 7 years ago

10.1111/evo.13865

Altitude and life‐history shape the evolution ofHeliconiuswings
Cited by: 25
Author(s): Gabriela Montejo‐Kovacevich, Jennifer E. Smith, Joana I. Meier, Caroline Bacquet, Eva Whiltshire-Romero, Nicola J. Nadeau, Chris D. Jiggins
Software Mentions: 4
Published: about 5 years ago

10.1098/rsos.191289

Cranial anatomy and taxonomy of the erythrosuchid archosauriform‘Vjushkovia triplicostata’Huene, 1960, from the Early Triassic of European Russia
Cited by: 13
Author(s): Richard J. Butler, А. Г. Сенников, Emma Dunne, Martín D. Ezcurra, Brandon P Hedrick, Susannah C. R. Maidment, Luke E. Meade, Thomas J. Raven, David J. Gower
Software Mentions: 4
Published: about 5 years ago

10.3390/genes9030166

Evolutionary Mechanisms of Varying Chromosome Numbers in the Radiation of Erebia Butterflies
Cited by: 16
Author(s): Kay Lucek
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0086042

Integrating Stand and Soil Properties to Understand Foliar Nutrient Dynamics during Forest Succession Following Slash-and-Burn Agriculture in the Bolivian Amazon
Cited by: 10
Author(s): Eben N. Broadbent, Angélica M. Almeyda Zambrano, Gregory P. Asner, Marlene Soriano, Christopher B. Field, Harrison Ramos de Souza, Marielos Peña-Claros, Rachel I. Adams, Rodolfo Dirzo, Larry Giles
Software Mentions: 3
Published: almost 11 years ago

10.1002/ece3.5419

Measuring avian specialization
Cited by: 24
Author(s): Federico Morelli, Yanina Benedetti, Anders Pape Møller, Richard A. Fuller
Software Mentions: 3
Published: over 5 years ago

10.1002/ece3.2051

phylosignal: an R package to measure, test, and explore the phylogenetic signal
Cited by: 327
Author(s): François Keck, Frédéric Rimet, Agnès Bouchez, Alain Franc
Software Mentions: 3
Published: almost 9 years ago

10.3389/fmicb.2019.02956

Bacterial Tradeoffs in Growth Rate and Extracellular Enzymes
Cited by: 65
Author(s): Kelly Irene Ramin, Steven D. Allison
Software Mentions: 3
Published: about 5 years ago

10.1093/gbe/evz256

Long-reads reveal that the chloroplast genome exists in two distinct versions in most plants
Cited by: 38
Author(s): Weiwen Wang, Robert Lanfear
Software Mentions: 3
Published: about 5 years ago

10.1038/s41598-017-09415-7

Evolutionary morphology of the lizard chemosensory system
Cited by: 25
Author(s): Simon Baeckens, Anthony Herrel, Chris Broeckhoven, Menelia Vasilopoulou‐Kampitsi, Katleen Huyghe, Jana Goyens, Raoul Van Damme
Software Mentions: 3
Published: over 7 years ago

10.1186/1471-2148-13-53

Ontogenetic development of intestinal length and relationships to diet in an Australasian fish family (Terapontidae)
Cited by: 32
Author(s): Aaron M. Davis, Peter J. Unmack, Bradley James Pusey, Richard G. Pearson, David L. Morgan
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0198537

Within-species phylogenetic relatedness of a common mycorrhizal fungus affects evenness in plant communities through effects on dominant species
Cited by: 6
Author(s): Romain Savary, Lucas Villard, Ian R. Sanders
Software Mentions: 2
Published: about 6 years ago

10.7554/eLife.22472

Codon optimization underpins generalist parasitism in fungi
Cited by: 35
Author(s): Thomas Badet, Rémi Peyraud, Malick Mbengue, Olivier Navaud, Mark Derbyshire, Richard P. Oliver, Adelin Barbacci, Sylvain Raffaele
Software Mentions: 2
Published: almost 8 years ago

10.1534/g3.119.400201

Molecular Traits of Long Non-protein Coding RNAs from Diverse Plant Species Show Little Evidence of Phylogenetic Relationships
Cited by: 12
Author(s): Caitlin M. A. Simopoulos, Elizabeth A. Weretilnyk, G. Brian Golding
Software Mentions: 2
Published: over 5 years ago

10.1128/mSystems.00065-18

Genomic Characterization and Copy Number Variation of Bacillus anthracis Plasmids pXO1 and pXO2 in a Historical Collection of 412 Strains
Cited by: 29
Author(s): Angela Peña-Gonzalez, Luis M. Rodriguez-R, Chung K. Marston, Jay E. Gee, Christopher A. Gulvik, Cari B. Kolton, Elke Saile, Michael Frace, Alex R. Hoffmaster, Konstantinos T. Konstantinidis
Software Mentions: 2
Published: over 6 years ago

10.1098/rspb.2020.3168

Evidence for reduced immune gene diversity and activity during the evolution of termites
Cited by: 7
Author(s): Shulin He, Thorben Sieksmeyer, Yanli Che, M. Alejandra Esparza Mora, Petr Stiblík, Ronald Banasiak, Mark C. Harrison, Jan Šobotník, Zongqing Wang, Paul R. Johnston, Dino P. McMahon
Software Mentions: 2
Published: almost 4 years ago

10.1002/ece3.3181

Tree seed traits’ response to monsoon climate and altitude in Indian subcontinent with particular reference to the Himalayas
Cited by: 13
Author(s): Surendra Pratap Singh, Shyam S. Phartyal, Sergey Rosbakh
Software Mentions: 2
Published: over 7 years ago

10.7717/peerj.2969

Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets
Cited by: 97
Author(s): Alex D. Washburne, Justin D. Silverman, Jonathan W. Leff, Dominic J. Bennett, John L. Darcy, Sayan Mukherjee, Noah Fierer, Lawrence A. David
Software Mentions: 1
Published: almost 8 years ago

10.3389/fgene.2021.737860

Life Expectancy in Marine Mammals Is Unrelated to Telomere Length but Is Associated With Body Size
Cited by: 2
Author(s): Kittisak Buddhachat, Janine L. Brown, Manthanee Kaewkool, Anocha Poommouang, Patcharaporn Kaewmong, Kongkiat Kittiwattanawong, Korakot Nganvongpanit
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pone.0238261

Does evolution of echolocation calls and morphology in Molossus result from convergence or stasis?
Cited by: 0
Author(s): Lívia O. Loureiro, Mark D. Engstrom, Burton K. Lim
Software Mentions: 1
Published: over 4 years ago

10.3389/fmicb.2020.01195

Soil Saprobic Fungi Differ in Their Response to Gradually and Abruptly Delivered Copper
Cited by: 6
Author(s): Polina Golubeva, Masahiro Ryo, Ludo A. H. Muller, Max‐Bernhard Ballhausen, Anika Lehmann, Moisés A. Sosa‐Hernández, Matthias C. Rillig
Software Mentions: 1
Published: over 4 years ago

10.1128/mSphere.00237-17

Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information
Cited by: 62
Author(s): Albert Barberán, Hildamarie Caceres Velazquez, Stuart Jones, Noah Fierer
Software Mentions: 1
Published: over 7 years ago

Projects: cran: phylosignal

Papers Mentioning phylosignal 39