Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fmicb.2020.580691

https://doi.org/10.3389/fmicb.2020.580691

Cited by: 20
Author(s): Laura M. Carroll, Rachel A. Cheng, Jasna Kovač
Published: over 3 years ago

Software Mentions 15

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
cran: dendextend
Extending 'dendrogram' Functionality in R
Papers that mentioned: 201
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: phylobase
Base Package for Phylogenetic Structures and Comparative Data
Papers that mentioned: 29
cran: phytools
Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586
cran: readxl
Read Excel Files
Papers that mentioned: 139
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: phytools
Useful tools for physicists.
Papers that mentioned: 586
pypi: pyani
pyani provides a package and script for calculation of genome-scale average nucleotide identity.
Papers that mentioned: 120
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92