Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-020-06832-3

https://doi.org/10.1186/s12864-020-06832-3

Seamless integration of image and molecular analysis for spatial transcriptomics workflows

Cited by: 121
Author(s): Joseph Bergenstråhle, Ludvig Larsson, Joakim Lundeberg
Published: over 4 years ago

Software Mentions 20

bioconductor: SingleCellExperiment

S4 Classes for Single Cell Data
Papers that mentioned: 36

cran: akima

Interpolation of Irregularly and Regularly Spaced Data
Papers that mentioned: 29

cran: ggiraph

Make 'ggplot2' Graphics Interactive
Papers that mentioned: 1

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: imager

Image Processing Library Based on 'CImg'
Papers that mentioned: 15

cran: imagerExtra

Extra Image Processing Library Based on 'imager'
Papers that mentioned: 1

cran: magick

Advanced Graphics and Image-Processing in R
Papers that mentioned: 21

cran: Matrix

Sparse and Dense Matrix Classes and Methods
Papers that mentioned: 172

cran: Morpho

Calculations and Visualisations Related to Geometric Morphometrics
Papers that mentioned: 118

cran: raster

Geographic Data Analysis and Modeling
Papers that mentioned: 561

cran: reshape2

Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421

cran: Rvcg

Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Papers that mentioned: 10

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

cran: shinyjs

Easily Improve the User Experience of Your Shiny Apps in Seconds
Papers that mentioned: 15

cran: spatstat

Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Papers that mentioned: 172

cran: viridis

Colorblind-Friendly Color Maps for R
Papers that mentioned: 92

pypi: akima

Akima Interpolation
Papers that mentioned: 29

pypi: magick

C-based Python Interface to ImageMagick
Papers that mentioned: 21

pypi: stats

Calculator-style statistical functions
Papers that mentioned: 3,105

pypi: viridis

Tree data structures and algorithms
Papers that mentioned: 92