An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s12864-020-06832-3

https://doi.org/10.1186/s12864-020-06832-3

Seamless integration of image and molecular analysis for spatial transcriptomics workflows

Cited by: 121
Author(s): Joseph Bergenstråhle, Ludvig Larsson, Joakim Lundeberg
Published: about 5 years ago

Software Mentions 20

bioconductor: SingleCellExperiment
S4 Classes for Single Cell Data
Papers that mentioned: 36
Very Likely Science (75)
cran: akima
Interpolation of Irregularly and Regularly Spaced Data
Papers that mentioned: 29
Likely Science (50)
cran: ggiraph
Make 'ggplot2' Graphics Interactive
Papers that mentioned: 1
Very Likely Science (100)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: imager
Image Processing Library Based on 'CImg'
Papers that mentioned: 15
Very Likely Science (100)
cran: imagerExtra
Extra Image Processing Library Based on 'imager'
Papers that mentioned: 1
Very Likely Science (75)
cran: magick
Advanced Graphics and Image-Processing in R
Papers that mentioned: 21
Very Likely Science (93)
cran: Matrix
Sparse and Dense Matrix Classes and Methods
Papers that mentioned: 172
Very Likely Science (75)
cran: Morpho
Calculations and Visualisations Related to Geometric Morphometrics
Papers that mentioned: 118
Very Likely Science (85)
cran: raster
Geographic Data Analysis and Modeling
Papers that mentioned: 561
Very Likely Science (85)
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
Very Likely Science (95)
cran: Rvcg
Manipulations of Triangular Meshes Based on the 'VCGLIB' API
Papers that mentioned: 10
Very Likely Science (75)
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
Very Likely Science (100)
cran: shinyjs
Easily Improve the User Experience of Your Shiny Apps in Seconds
Papers that mentioned: 15
Very Likely Science (75)
cran: spatstat
Spatial Point Pattern Analysis, Model-Fitting, Simulation, Tests
Papers that mentioned: 172
Very Likely Science (93)
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
Very Likely Science (100)
pypi: akima
Akima Interpolation
Papers that mentioned: 29
Very Likely Science (75)
pypi: magick
C-based Python Interface to ImageMagick
Papers that mentioned: 21
Very Likely Science (65)
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
Very Likely Science (90)
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92
Very Likely Science (100)