Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: magick
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/magick
Advanced Graphics and Image-Processing in R
34 versions
Latest release: about 1 year ago
166 dependent packages
81,784 downloads last month
Papers Mentioning magick 21
10.1186/s12864-020-06832-3
Seamless integration of image and molecular analysis for spatial transcriptomics workflowsCited by: 121
Author(s): Joseph Bergenstråhle, Ludvig Larsson, Joakim Lundeberg
Software Mentions: 20
Published: over 4 years ago
10.1093/molbev/msaa311
A Two-Locus System with Strong Epistasis Underlies Rapid Parasite-Mediated Evolution of Host ResistanceCited by: 15
Author(s): Camille Ameline, Yann Bourgeois, Felix Vögtli, Eevi Savola, Jason P. Andras, Jan Engelstädter, Dieter Ebert
Software Mentions: 19
Published: almost 4 years ago
10.1084/jem.20201795
Diagnostic blood RNA profiles for human acute spinal cord injuryCited by: 21
Author(s): Nikos Kyritsis, Abel Torres-Espín, Patrick G. Schupp, J. Russell Huie, Austin Chou, Xuan Duong Fernandez, Libby Thomas, Rachel Tsolinas, Debra D. Hemmerle, Lisa U. Pascual, Vineeta Singh, Jonathan Z. Pan, Jason F. Talbott, William D. Whetstone, John F. Burke, Anthony M DiGiorgio, Philip Weinstein, Geoffrey T. Manley, Sanjay S. Dhall, Adam R. Ferguson, Michael C. Oldham, Jacqueline C. Bresnahan, Michael S. Beattie
Software Mentions: 19
Published: almost 4 years ago
10.12688/wellcomeopenres.16458.2
MethylDetectR: a software for methylation-based health profilingCited by: 14
Author(s): Robert F. Hillary, Riccardo E. Marioni
Software Mentions: 17
Published: over 3 years ago
10.1038/s41598-020-80340-y
Universal principles underlying segmental structures in parrot song and human speechCited by: 6
Author(s): Dan C. Mann, W. Tecumseh Fitch, Hsiao‐Wei Tu, Marisa Hoeschele
Software Mentions: 17
Published: almost 4 years ago
10.1093/conphys/coaa131
Automated flow control of a multi-lane swimming chamber for small fishes indicates species-specific sensitivity to experimental protocolsCited by: 3
Author(s): Björn Illing, Andrea Severati, Justin Hochen, Paul M. Boyd, Paulin Raison, Rachel Mather, Adam T. Downie, Jodie L. Rummer, Frederieke J. Kroon, Craig Humphrey
Software Mentions: 16
Published: almost 4 years ago
10.1002/ece3.7992
Using Delaunay triangulation to sample whole‐specimen color from digital imagesCited by: 5
Author(s): Jennifer J Valvo, J. David Aponte, Mitch J Daniel, Kenna Dwinell, Helen Rodd, David Houle, Kimberly A. Hughes
Software Mentions: 12
Published: over 3 years ago
10.1002/ece3.7130
QuoVidi: An open‐source web application for the organization of large‐scale biological treasure huntsCited by: 8
Author(s): Guillaume Lobet, Charlotte Descamps, Lola Leveau, Alain Guillet, Jean-François Rees
Software Mentions: 12
Published: almost 4 years ago
10.3389/fcell.2020.618552
A Semi-automated Organoid Screening Method Demonstrates Epigenetic Control of Intestinal Epithelial DifferentiationCited by: 12
Author(s): Jenny Ostrop, Rosalie T. Zwiggelaar, Marianne Terndrup Pedersen, François Gerbe, Korbinian Bösl, Håvard T. Lindholm, Alberto Díez-Sánchez, Naveen Parmar, Silke Radetzki, Jens Peter von Kries, Philippe Jay, Kim B. Jensen, C.H. Arrowsmith, Menno J. Oudhoff
Software Mentions: 12
Published: almost 4 years ago
10.3389/fonc.2021.690324
Predictive Nomogram and Risk Factors for Lymph Node Metastasis in Bladder CancerCited by: 11
Author(s): Zijian Tian, Lingfeng Meng, Xin Wang, Tongxiang Diao, Mao‐Lin Hu, Miao Wang, Yaqun Zhang, Ming Liu
Software Mentions: 12
Published: over 3 years ago
10.1093/gigascience/giaa030
Multi-dimensional machine learning approaches for fruit shape phenotyping in strawberryCited by: 26
Author(s): Mitchell J Feldmann, Michael A. Hardigan, Randi Famula, Cindy M. López, Amy Tabb, Glenn Cole, Steven J. Knapp
Software Mentions: 10
Published: over 4 years ago
10.1371/journal.pone.0245280
rfaRm: An R client-side interface to facilitate the analysis of the Rfam database of RNA familiesCited by: 0
Author(s): Lara Sellés Vidal, Rafael Ayala, Guy‐Bart Stan, Rodrigo Ledesma-Amaro
Software Mentions: 10
Published: almost 4 years ago
10.12688/f1000research.27062.2
SAPHIR: a Shiny application to analyze tissue section imagesCited by: 0
Author(s): Elodie Germani, Hugues Lelouard, Mathieu Fallet
Software Mentions: 9
Published: over 3 years ago
10.18632/aging.202157
Development and validation of prognostic nomograms for early-onset locally advanced colon cancerCited by: 21
Author(s): Yuqiang Li, Wenxue Liu, Zhongyi Zhou, Heming Ge, Lilan Zhao, Heli Liu, Xiangping Song, Dan Wang, Qian Pei, Fengbo Tan
Software Mentions: 8
Published: almost 4 years ago
10.3389/fpls.2020.00820
Biological Nitrification Inhibition (BNI): Phenotyping of a Core Germplasm Collection of the Tropical Forage Grass Megathyrsus maximus Under Greenhouse ConditionsCited by: 28
Author(s): Daniel Villegas, Ashly Arévalo, Jonathan Nùñez, Johanna Mazabel, G. V. Subbarao, Idupulapati M. Rao, Jose J De Vega, Jacobo Arango
Software Mentions: 8
Published: over 4 years ago
10.5888/pcd17.190286
Visualizing 50 Years of Cancer Mortality Rates Across the US at Multiple Geographic Levels Using a Synchronized Map and Graph AnimationCited by: 0
Author(s): Isaac H. Michaels, Sylvia Pirani, Alvaro Carrascal
Software Mentions: 7
Published: over 4 years ago
10.3389/fpsyg.2020.00945
Introducing a Computerized Figural Memory Test Based on Automatic Item Generation: An Analysis With the Rasch Poisson Counts ModelCited by: 3
Author(s): David Jendryczko, Laura Berkemeyer, Heinz Holling
Software Mentions: 5
Published: over 4 years ago
10.7717/peerj.7255
colocr: an R package for conducting co-localization analysis on fluorescence microscopy imagesCited by: 7
Author(s): Mahmoud Ahmed, Trang Huyen Lai, Deok Ryong Kim
Software Mentions: 5
Published: over 5 years ago
10.3389/fpls.2021.698640
High-Resolution X-Ray Computed Tomography: A New Workflow for the Analysis of Xylogenesis and Intra-Seasonal Wood Biomass ProductionCited by: 8
Author(s): Romain Lehnebach, Matteo Campioli, Jožica Gričar, Peter Prislan, Bertold Mariën, Hans Beeckman, Jan Van den Bulcke
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0204071
Deep learning-based quantification of abdominal fat on magnetic resonance imagesCited by: 10
Author(s): Andrew T. Grainger, Nicholas J. Tustison, Kun Qing, R. Jack Roy, Stuart S. Berr, Weibin Shi
Software Mentions: 3
Published: about 6 years ago
10.3897/zookeys.795.28416
Imaging natural history museum collections from the bottom up: 3D print technology facilitates imaging of fluid-stored arthropods with flatbed scannersCited by: 6
Author(s): Patina K. Mendez, Sangyeon Lee, Chris E. Venter
Software Mentions: 2
Published: about 6 years ago