Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1084/jem.20201795

https://doi.org/10.1084/jem.20201795

Diagnostic blood RNA profiles for human acute spinal cord injury

Cited by: 21
Author(s): Nikos Kyritsis, Abel Torres-Espín, Patrick G. Schupp, J. Russell Huie, Austin Chou, Xuan Duong Fernandez, Libby Thomas, Rachel Tsolinas, Debra D. Hemmerle, Lisa U. Pascual, Vineeta Singh, Jonathan Z. Pan, Jason F. Talbott, William D. Whetstone, John F. Burke, Anthony M DiGiorgio, Philip Weinstein, Geoffrey T. Manley, Sanjay S. Dhall, Adam R. Ferguson, Michael C. Oldham, Jacqueline C. Bresnahan, Michael S. Beattie
Published: almost 4 years ago

Software Mentions 19

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
Papers that mentioned: 123
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: PCAtools
PCAtools: Everything Principal Components Analysis
Papers that mentioned: 20
bioconductor: sva
Surrogate Variable Analysis
Papers that mentioned: 511
bioconductor: VennDetail
A package for visualization and extract details
Papers that mentioned: 3
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggdendro
Create Dendrograms and Tree Diagrams Using 'ggplot2'
Papers that mentioned: 48
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: glmnetUtils
Utilities for 'Glmnet'
Papers that mentioned: 3
cran: magick
Advanced Graphics and Image-Processing in R
Papers that mentioned: 21
cran: rgl
3D Visualization Using OpenGL
Papers that mentioned: 156
cran: Rtsne
T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation
Papers that mentioned: 255
cran: table1
Tables of Descriptive Statistics in HTML
Papers that mentioned: 6
pypi: fisher
Fast Fisher's Exact Test
Papers that mentioned: 21
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: magick
C-based Python Interface to ImageMagick
Papers that mentioned: 21