Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: fisher

https://packages.ecosyste.ms/registries/pypi.org/packages/fisher

Fast Fisher's Exact Test
10 versions
Latest release: over 1 year ago
6 dependent packages
3,625 downloads last month

Papers Mentioning fisher 21

Diagnostic blood RNA profiles for human acute spinal cord injury
Cited by: 21
Author(s): Nikos Kyritsis, Abel Torres-Espín, Patrick G. Schupp, J. Russell Huie, Austin Chou, Xuan Duong Fernandez, Libby Thomas, Rachel Tsolinas, Debra D. Hemmerle, Lisa U. Pascual, Vineeta Singh, Jonathan Z. Pan, Jason F. Talbott, William D. Whetstone, John F. Burke, Anthony M DiGiorgio, Philip Weinstein, Geoffrey T. Manley, Sanjay S. Dhall, Adam R. Ferguson, Michael C. Oldham, Jacqueline C. Bresnahan, Michael S. Beattie
Software Mentions: 19
Published: almost 4 years ago

10.1038/srep18871

LEGO: a novel method for gene set over-representation analysis by incorporating network-based gene weights
Cited by: 37
Author(s): Xinran Dong, Yun Huang, Xiao Wang, Weidong Tian
Software Mentions: 12
Published: almost 9 years ago

10.1371/journal.pbio.3001365

PhyloFisher: A phylogenomic package for resolving eukaryotic relationships
Cited by: 34
Author(s): Alexander K. Tice, David Žihala, Tomáš Pánek, Robert E. Jones, Eric D. Salomaki, Serafim Nenarokov, Fabien Burki, Marek Eliáš, Laura Eme, Andrew J. Roger, Antonis Rokas, Xing‐Xing Shen, Jürgen F. H. Strassert, Martin Kolísko, Matthew W. Brown
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pone.0239639

Monsters with a shortened vertebral column: A population phenomenon in radiating fish Labeobarbus (Cyprinidae)
Cited by: 9
Author(s): А. С. Голубцов, Nikolai B. Korostelev, Б. А. Левин
Software Mentions: 8
Published: almost 4 years ago

10.7554/eLife.55794

Intra-species differences in population size shape life history and genome evolution
Cited by: 31
Author(s): David Willemsen, Rongfeng Cui, Martin Reichard, Dario Riccardo Valenzano
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0102610

Potential Therapeutic Targets for Oral Cancer: ADM, TP53, EGFR, LYN, CTLA4, SKIL, CTGF, CD70
Cited by: 28
Author(s): Saurabh Bundela, Anjana Sharma, Prakash S. Bisen
Software Mentions: 6
Published: over 10 years ago

10.1186/s12885-018-4848-x

Genomic analysis of DNA repair genes and androgen signaling in prostate cancer
Cited by: 53
Author(s): Kasey Jividen, Katarzyna Kedzierska, Chunsong Yang, Karol Szlachta, Aakrosh Ratan, Bryce M. Paschal
Software Mentions: 6
Published: about 6 years ago

10.1186/s12864-020-6746-2

Genetic differentiation and intrinsic genomic features explain variation in recombination hotspots among cocoa tree populations
Cited by: 13
Author(s): Enrique J. Schwarzkopf, Juan Carlos Motamayor, Omar E. Cornejo
Software Mentions: 5
Published: over 4 years ago

10.1186/s12859-017-1762-1

Variable selection for disease progression models: methods for oncogenetic trees and application to cancer and HIV
Cited by: 3
Author(s): Katrin Hainke, Sebastian Szugat, Roland Fried, Jörg Rahnenführer
Software Mentions: 4
Published: over 7 years ago

10.1111/mec.12521

Population genomic footprints of selection and associations with climate in natural populations of <i>Arabidopsis halleri</i> from the Alps
Cited by: 89
Author(s): Martin C. Fischer, Christian Rellstab, Andrew Tedder, Stefan Zoller, Félix Gugerli, Kentaro Shimizu, Rolf Holderegger, Alex Widmer
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pcbi.1003493

A Novel Bayesian Method for Detection of APOBEC3-Mediated Hypermutation and Its Application to Zoonotic Transmission of Simian Foamy Viruses
Cited by: 16
Author(s): F. A. Matsen, Christopher T Small, Khanh Soliven, Gregory Engel, Mohammed Mostafa Feeroz, Xiaoxing Wang, Karen L. Craig, Md. Rakib Hasan, Michael Emerman, Maxine L. Linial, Lisa Jones‐Engel
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pone.0253435

Sports practice in Japan and France: A comparative analysis
Cited by: 1
Author(s): Brice Lefèvre, Hiroatsu Nohara, O. Nier
Software Mentions: 4
Published: over 3 years ago

10.1093/jxb/eraa086

Novel routes towards bioplastics from plants: elucidation of the methylperillate biosynthesis pathway from Salvia dorisiana trichomes
Cited by: 12
Author(s): E. Jongedijk, Sebastian Müller, Aalt D. J. van Dijk, Elio Schijlen, Antoine Champagne, Marc Boutry, Mark Levisson, Sander van der Krol, Harro J. Bouwmeester, Jules Beekwilder
Software Mentions: 3
Published: almost 5 years ago

10.3389/fnins.2015.00392

Noncoding RNA in the transcriptional landscape of human neural progenitor cell differentiation
Cited by: 7
Author(s): Patrick M. Hecht, Inmaculada Ballesteros-Yáñez, Nicole Grepo, James A. Knowles, Jerry L. Campbell
Software Mentions: 3
Published: about 9 years ago

10.3389/fgene.2020.00808

Gender Differential Transcriptome in Gastric and Thyroid Cancers
Cited by: 8
Author(s): Abel Sousa, Marta Ferreira, Carla Oliveira, Pedro G. Ferreira
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0073353

Resection Probability Maps for Quality Assessment of Glioma Surgery without Brain Location Bias
Cited by: 63
Author(s): Philip C. De Witt Hamer, Eef J. Hendriks, Emmanuel Mandonnet, Frederik Barkhof, Aeilko H. Zwinderman, Hugues Duffau
Software Mentions: 2
Published: over 11 years ago

10.1186/s12870-014-0330-3

Prioritization of candidate genes in QTL regions based on associations between traits and biological processes
Cited by: 30
Author(s): Joachim W. Bargsten, Jan-Peter Nap, Gabino F. Sánchez-Pérez, Aalt D. J. van Dijk
Software Mentions: 1
Published: about 10 years ago

10.1186/s12864-015-1674-2

Identifying and characterising key alternative splicing events in Drosophila development
Cited by: 8
Author(s): Jonathan G. Lees, Juan A. G. Ranea, Christine A. Orengo
Software Mentions: 1
Published: over 9 years ago

10.3389/fgene.2019.00421

DiVenn: An Interactive and Integrated Web-Based Visualization Tool for Comparing Gene Lists
Cited by: 75
Author(s): Liang Sun, Sufen Dong, Yinbing Ge, Jose Pedro Fonseca, Zachary T. Robinson, Kirankumar S. Mysore, Perdeep K. Mehta
Software Mentions: 1
Published: over 5 years ago

10.3390/genes12081171

Extracellular Vesicle-Derived DNA vs. CfDNA as a Biomarker for the Detection of Colon Cancer
Cited by: 5
Author(s): Kavita Thakur, Manu Smriti Singh, Sara Feldstein-Davydova, Victoria Hannes, Dov Hershkovitz, Shlomo Tsuriel
Software Mentions: 1
Published: over 3 years ago

10.1371/journal.pcbi.1005221

An Asymmetrically Balanced Organization of Kinases versus Phosphatases across Eukaryotes Determines Their Distinct Impacts
Cited by: 32
Author(s): Ilan Smoly, Netta Shemesh, Michal Ziv-Ukelson, Anat Ben‐Zvi, Esti Yeger-Lotem
Software Mentions: 1
Published: almost 8 years ago