Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/srep18871

https://doi.org/10.1038/srep18871

LEGO: a novel method for gene set over-representation analysis by incorporating network-based gene weights

Cited by: 37
Author(s): Xinran Dong, Yun Huang, Xiao Wang, Weidong Tian
Published: almost 9 years ago

Software Mentions 12

bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: PADOG
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
Papers that mentioned: 19
bioconductor: ROntoTools
R Onto-Tools suite
Papers that mentioned: 7
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
cran: CePa
Centrality-Based Pathway Enrichment
Papers that mentioned: 22
cran: GANPA
Gene Association Network-Based Pathway Analysis (GANPA)
Papers that mentioned: 8
cran: GSA
Gene Set Analysis
Papers that mentioned: 285
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
pypi: cepa
Stem is a Python controller library that allows applications to interact with Tor (https://www.torproject.org/).
Papers that mentioned: 2
pypi: fisher
Fast Fisher's Exact Test
Papers that mentioned: 21
pypi: GSA
Python Package to implement Gravitational Search Algorithm. Documentation at:https://github.com/deepanshu1999/GSA
Papers that mentioned: 285
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555