Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/srep18871

https://doi.org/10.1038/srep18871

Cited by: 37
Author(s): Xinran Dong, Yun Huang, Xiao Wang, Weidong Tian
Published: over 8 years ago

Software Mentions 12

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: PADOG

Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
Papers that mentioned: 19

bioconductor: ROntoTools

R Onto-Tools suite
Papers that mentioned: 7

bioconductor: SPIA

Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155

cran: CePa

Centrality-Based Pathway Enrichment
Papers that mentioned: 22

cran: GANPA

Gene Association Network-Based Pathway Analysis (GANPA)
Papers that mentioned: 8

cran: GSA

Gene Set Analysis
Papers that mentioned: 285

cran: igraph

Network Analysis and Visualization
Papers that mentioned: 1,555

pypi: cepa

Stem is a Python controller library that allows applications to interact with Tor (https://www.torproject.org/).
Papers that mentioned: 2

pypi: fisher

Fast Fisher's Exact Test
Papers that mentioned: 21

pypi: GSA

Python Package to implement Gravitational Search Algorithm. Documentation at:https://github.com/deepanshu1999/GSA
Papers that mentioned: 285

pypi: igraph

High performance graph data structures and algorithms
Papers that mentioned: 1,555