Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: ROntoTools

https://packages.ecosyste.ms/registries/bioconductor.org/packages/ROntoTools

R Onto-Tools suite
1 version
Latest release: about 1 year ago
2 dependent packages
24,284 downloads total

Papers Mentioning ROntoTools 7

10.1186/s13059-019-1790-4

Identifying significantly impacted pathways: a comprehensive review and assessment
Cited by: 113
Author(s): Tuan-Minh Nguyen, Adib Shafi, Tin Nguyen, Sorin Drăghici
Software Mentions: 12
Published: about 5 years ago

10.1038/srep18871

LEGO: a novel method for gene set over-representation analysis by incorporating network-based gene weights
Cited by: 37
Author(s): Xinran Dong, Yun Huang, Xiao Wang, Weidong Tian
Software Mentions: 12
Published: almost 9 years ago

10.3389/fphys.2013.00278

Methods and approaches in the topology-based analysis of biological pathways
Cited by: 162
Author(s): Cristina Mitrea, Zeinab Taghavi, Behzad Bokanizad, Samer Najeeb Hanoudi, Rebecca Tagett, Michèle Donato, Călin Voichiţa, Sorin Drăghici
Software Mentions: 9
Published: almost 12 years ago

10.1038/srep29251

Overcoming the matched-sample bottleneck: an orthogonal approach to integrate omic data
Cited by: 21
Author(s): Tin Nguyen, Diana Diaz, Rebecca Tagett, Sorin Drăghici
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-020-62578-8

Detecting qualitative changes in biological systems
Cited by: 5
Author(s): Cristina Mitrea, Aliccia Bollig‐Fischer, Călin Voichiţa, Michèle Donato, Roberto Romero, Sorin Drăghici
Software Mentions: 4
Published: over 4 years ago

10.7717/peerj.9695

Identifying disease-associated signaling pathways through a novel effector gene analysis
Cited by: 1
Author(s): Zhenshen Bao, Bing Zhang, Li Li, Qinyu Ge, Wanjun Gu, Ya Mei Bai
Software Mentions: 3
Published: over 4 years ago

10.3389/fmicb.2017.01036

RNA-Seq Reveals Enhanced Sugar Metabolism in Streptococcus mutans Co-cultured with Candida albicans within Mixed-Species Biofilms
Cited by: 66
Author(s): Jinzhi He, Dongyeop Kim, Xuedong Zhou, Sang‐Joon Ahn, Robert A. Burne, Vincent P. Richards, Hyun Koo
Software Mentions: 3
Published: over 7 years ago