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Papers: 10.1186/s13059-019-1790-4

https://doi.org/10.1186/s13059-019-1790-4

Identifying significantly impacted pathways: a comprehensive review and assessment

Cited by: 113
Author(s): Tuan-Minh Nguyen, Adib Shafi, Tin Nguyen, Sorin Drăghici
Published: almost 6 years ago

Software Mentions 12

bioconductor: BLMA
BLMA: A package for bi-level meta-analysis
Papers that mentioned: 1
Very Likely Science (100)
bioconductor: Category
Category Analysis
Papers that mentioned: 21
Very Likely Science (100)
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
Very Likely Science (100)
bioconductor: PADOG
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
Papers that mentioned: 19
Very Likely Science (100)
bioconductor: PathNet
An R package for pathway analysis using topological information
Papers that mentioned: 13
Very Likely Science (100)
bioconductor: ROntoTools
R Onto-Tools suite
Papers that mentioned: 7
Very Likely Science (98)
bioconductor: sigPathway
Pathway Analysis
Papers that mentioned: 15
Very Likely Science (100)
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
Very Likely Science (100)
cran: CePa
Centrality-Based Pathway Enrichment
Papers that mentioned: 22
Very Likely Science (87)
cran: FunCluster
Papers that mentioned: 3
Unlikely Science (0)
cran: GSA
Gene Set Analysis
Papers that mentioned: 285
Very Likely Science (93)
pypi: GSA
Python Package to implement Gravitational Search Algorithm. Documentation at:https://github.com/deepanshu1999/GSA
Papers that mentioned: 285
Very Likely Science (90)