Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: PathNet

https://packages.ecosyste.ms/registries/bioconductor.org/packages/PathNet

An R package for pathway analysis using topological information
1 version
Latest release: 10 months ago
18,860 downloads total

Papers Mentioning PathNet 13

10.1186/s12859-016-0884-1

Bioconductor’s EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysis
Cited by: 62
Author(s): Ludwig Geistlinger, Gergely Csaba, Ralf Zimmer
Software Mentions: 14
Published: over 8 years ago

10.1186/s13059-019-1790-4

Identifying significantly impacted pathways: a comprehensive review and assessment
Cited by: 113
Author(s): Tuan-Minh Nguyen, Adib Shafi, Tin Nguyen, Sorin Drăghici
Software Mentions: 12
Published: almost 5 years ago

10.1371/journal.pcbi.1008979

netgsa: Fast computation and interactive visualization for topology-based pathway enrichment analysis
Cited by: 4
Author(s): Michael Hellstern, Jing Ma, Kun Yue, Ali Shojaie
Software Mentions: 12
Published: about 3 years ago

10.1186/s12859-019-3146-1

A comparative study of topology-based pathway enrichment analysis methods
Cited by: 51
Author(s): Jing Ma, Ali Shojaie, George Michailidis
Software Mentions: 10
Published: over 4 years ago

10.1186/s12859-015-0751-5

Comparative study on gene set and pathway topology-based enrichment methods
Cited by: 61
Author(s): Michaela Bayerlová, Klaus Jung, Frank Krämer, Florian Klemm, Annalen Bleckmann, Tim Beißbarth
Software Mentions: 6
Published: almost 9 years ago

10.3389/fgene.2020.00654

Gene Set Analysis: Challenges, Opportunities, and Future Research
Cited by: 98
Author(s): Farhad Maleki, Katie Ovens, Daniel J. Hogan, Anthony Kusalik
Software Mentions: 5
Published: about 4 years ago

10.3934/Neuroscience.2019.4.333

Identification of biomarkers associated with Parkinson’s disease by gene expression profiling studies and bioinformatics analysis
Cited by: 10
Author(s): Marios G. Krokidis
Software Mentions: 4
Published: over 5 years ago

10.1186/1471-2164-16-S8-S6

NET-GE: a novel NETwork-based Gene Enrichment for detecting biological processes associated to Mendelian diseases
Cited by: 15
Author(s): Pietro Di Lena, Pier Luigi Martelli, Piero Fariselli, Rita Casadio
Software Mentions: 4
Published: about 9 years ago

10.1186/1751-0473-7-10

PathNet: a tool for pathway analysis using topological information
Cited by: 62
Author(s): Bhaskar Dutta, Anders Wallqvist, Jaques Reifman
Software Mentions: 4
Published: almost 12 years ago

10.3389/fnhum.2021.621493

MindLink-Eumpy: An Open-Source Python Toolbox for Multimodal Emotion Recognition
Cited by: 13
Author(s): Ruixin Li, Yan Liang, Xiaojian Liu, Bingbing Wang, Wenxin Huang, Zhanchuan Cai, Yaoguang Ye, Lina Qiu, Jiahui Pan
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-64165-3

Stepwise PathNet: a layer-by-layer knowledge-selection-based transfer learning algorithm
Cited by: 10
Author(s): Shunsuke Imai, Shichio Kawai, Hajime Nobuhara
Software Mentions: 3
Published: about 4 years ago

10.18632/oncotarget.23555

Identification and analysis of hub genes and networks related to hypoxia preconditioning in mice (No 035215)
Cited by: 3
Author(s): Haiting Cheng, Can Cui, Shousi Lu, Binbin Xia, Xiaorong Li, Pinxiang Xu, Ming Xue
Software Mentions: 1
Published: over 6 years ago

10.3389/fnbot.2021.669534

Learning Then, Learning Now, and Every Second in Between: Lifelong Learning With a Simulated Humanoid Robot
Cited by: 3
Author(s): Aleksej Logacjov, Matthias Kerzel, Stefan Wermter
Software Mentions: 1
Published: about 3 years ago