Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1008979

https://doi.org/10.1371/journal.pcbi.1008979

netgsa: Fast computation and interactive visualization for topology-based pathway enrichment analysis

Cited by: 4
Author(s): Michael Hellstern, Jing Ma, Kun Yue, Ali Shojaie
Published: over 3 years ago

Software Mentions 12

bioconductor: CAMERA
Collection of annotation related methods for mass spectrometry data
Papers that mentioned: 429
bioconductor: DEGraph
Two-sample tests on a graph
Papers that mentioned: 15
bioconductor: graphite
GRAPH Interaction from pathway Topological Environment
Papers that mentioned: 30
bioconductor: PathNet
An R package for pathway analysis using topological information
Papers that mentioned: 13
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
cran: CePa
Centrality-Based Pathway Enrichment
Papers that mentioned: 22
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: netgsa
Network-Based Gene Set Analysis
Papers that mentioned: 1
cran: RcppEigen
'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library
Papers that mentioned: 12
cran: topologyGSA
Gene Set Analysis Exploiting Pathway Topology
Papers that mentioned: 4
pypi: graphite
Papers that mentioned: 30
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555