Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: topologyGSA
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/topologyGSA
Gene Set Analysis Exploiting Pathway Topology
15 versions
Latest release: about 1 year ago
1 dependent package
493 downloads last month
Papers Mentioning topologyGSA 4
10.1371/journal.pcbi.1008979
netgsa: Fast computation and interactive visualization for topology-based pathway enrichment analysisCited by: 4
Author(s): Michael Hellstern, Jing Ma, Kun Yue, Ali Shojaie
Software Mentions: 12
Published: over 3 years ago
10.1186/s12859-019-3146-1
A comparative study of topology-based pathway enrichment analysis methodsCited by: 51
Author(s): Jing Ma, Ali Shojaie, George Michailidis
Software Mentions: 10
Published: about 5 years ago
10.1186/1471-2105-13-20
graphite - a Bioconductor package to convert pathway topology to gene networkCited by: 157
Author(s): Gabriele Sales, Enrica Calura, Duccio Cavalieri, Chiara Romualdi
Software Mentions: 7
Published: almost 13 years ago
10.18632/oncotarget.14107
High throughput estimation of functional cell activities reveals disease mechanisms and predicts relevant clinical outcomesCited by: 59
Author(s): Marta R. Hidalgo, Cankut Çubuk, Alicia Amadoz, Francisco Salavert, José Carbonell-Caballero, Joaquín Dopazo
Software Mentions: 5
Published: almost 8 years ago