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Papers: 10.1186/1471-2105-13-20

https://doi.org/10.1186/1471-2105-13-20

graphite - a Bioconductor package to convert pathway topology to gene network

Cited by: 157
Author(s): Gabriele Sales, Enrica Calura, Duccio Cavalieri, Chiara Romualdi
Published: over 13 years ago

Software Mentions 7

bioconductor: DEGraph
Two-sample tests on a graph
Papers that mentioned: 15
Very Likely Science (90)
bioconductor: graphite
GRAPH Interaction from pathway Topological Environment
Papers that mentioned: 30
Very Likely Science (100)
bioconductor: KEGGgraph
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
Papers that mentioned: 39
Very Likely Science (100)
bioconductor: NCIgraph
Pathways from the NCI Pathways Database
Papers that mentioned: 3
Very Likely Science (100)
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
Very Likely Science (100)
cran: topologyGSA
Gene Set Analysis Exploiting Pathway Topology
Papers that mentioned: 4
Very Likely Science (85)
pypi: graphite
Papers that mentioned: 30
Very Likely Science (65)