Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2105-13-20

https://doi.org/10.1186/1471-2105-13-20

graphite - a Bioconductor package to convert pathway topology to gene network

Cited by: 157
Author(s): Gabriele Sales, Enrica Calura, Duccio Cavalieri, Chiara Romualdi
Published: almost 13 years ago

Software Mentions 7

bioconductor: DEGraph
Two-sample tests on a graph
Papers that mentioned: 15
bioconductor: graphite
GRAPH Interaction from pathway Topological Environment
Papers that mentioned: 30
bioconductor: KEGGgraph
KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor
Papers that mentioned: 39
bioconductor: NCIgraph
Pathways from the NCI Pathways Database
Papers that mentioned: 3
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
cran: topologyGSA
Gene Set Analysis Exploiting Pathway Topology
Papers that mentioned: 4
pypi: graphite
Papers that mentioned: 30