Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-019-3146-1

https://doi.org/10.1186/s12859-019-3146-1

A comparative study of topology-based pathway enrichment analysis methods

Cited by: 51
Author(s): Jing Ma, Ali Shojaie, George Michailidis
Published: about 5 years ago

Software Mentions 10

bioconductor: CAMERA
Collection of annotation related methods for mass spectrometry data
Papers that mentioned: 429
bioconductor: DEGraph
Two-sample tests on a graph
Papers that mentioned: 15
bioconductor: graphite
GRAPH Interaction from pathway Topological Environment
Papers that mentioned: 30
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: PathNet
An R package for pathway analysis using topological information
Papers that mentioned: 13
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
cran: CePa
Centrality-Based Pathway Enrichment
Papers that mentioned: 22
cran: topologyGSA
Gene Set Analysis Exploiting Pathway Topology
Papers that mentioned: 4
pypi: analysis
Source code analysis of Python programs
Papers that mentioned: 2,036
pypi: graphite
Papers that mentioned: 30