Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12859-016-0884-1
https://doi.org/10.1186/s12859-016-0884-1
Cited by: 62
Author(s): Ludwig Geistlinger, Gergely Csaba, Ralf Zimmer
Published: over 8 years ago
Software Mentions 14
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: EDASeq
Exploratory Data Analysis and Normalization for RNA-SeqPapers that mentioned: 61
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: EnrichmentBrowser
Seamless navigation through combined results of set-based and network-based enrichment analysisPapers that mentioned: 12
bioconductor: KEGGgraph
KEGGgraph: A graph approach to KEGG PATHWAY in R and BioconductorPapers that mentioned: 39
bioconductor: KEGGREST
Client-side REST access to the Kyoto Encyclopedia of Genes and Genomes (KEGG)Papers that mentioned: 75
bioconductor: PathNet
An R package for pathway analysis using topological informationPapers that mentioned: 13
bioconductor: pathview
a tool set for pathway based data integration and visualizationPapers that mentioned: 144
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbationsPapers that mentioned: 155