Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: EnrichmentBrowser
https://packages.ecosyste.ms/registries/bioconductor.org/packages/EnrichmentBrowser
Seamless navigation through combined results of set-based and network-based enrichment analysis
2 versions
Latest release: about 1 year ago
4 dependent packages
43,981 downloads total
Papers Mentioning EnrichmentBrowser 12
10.1186/s12859-016-0884-1
Bioconductor’s EnrichmentBrowser: seamless navigation through combined results of set- & network-based enrichment analysisCited by: 62
Author(s): Ludwig Geistlinger, Gergely Csaba, Ralf Zimmer
Software Mentions: 14
Published: almost 9 years ago
10.1093/bib/bbz158
Toward a gold standard for benchmarking gene set enrichment analysisCited by: 74
Author(s): Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos, Lucas Schiffer, Nitesh Turaga, Charity W. Law, Sean Davis, Vincent J. Carey, Martin Morgan, Ralf Zimmer, Levi Waldron
Software Mentions: 13
Published: almost 5 years ago
10.12688/f1000research.20887.3
RCy3: Network biology using Cytoscape from within RCited by: 72
Author(s): Julia Gustavsen, Shraddha Pai, Ruth Isserlin, Barry Demchak, Alexander R. Pico
Software Mentions: 6
Published: about 5 years ago
10.1186/s40364-021-00292-x
The REASON score: an epigenetic and clinicopathologic score to predict risk of poor survival in patients with early stage oral squamous cell carcinomaCited by: 13
Author(s): Chi T. Viet, Gary Yu, Kesava Asam, Carissa M. Thomas, Angela J. Yoon, Yan Chen Wongworawat, Mina Haghighiabyaneh, Courtney A. Kilkuts, Caitlyn M. McGue, Marcus Couey, Nicholas Callahan, Coleen Doan, Paul C. Walker, Khanh K. Nguyen, Stephanie C. Kidd, Steve C. Lee, Anupama Grandhi, Allen Cheng, Ashish Patel, Elizabeth Philipone, Olivia L. Ricks, Clint Allen, Bradley E. Aouizerat
Software Mentions: 6
Published: over 3 years ago
10.1186/s12859-017-1674-0
Ranking metrics in gene set enrichment analysis: do they matter?Cited by: 47
Author(s): Joanna Żyła, Michał Marczyk, January Weiner, Joanna Polańska
Software Mentions: 5
Published: over 7 years ago
10.1371/journal.pcbi.1005187
MinePath: Mining for Phenotype Differential Sub-paths in Molecular PathwaysCited by: 24
Author(s): Lefteris Koumakis, Alexandros Kanterakis, Evgenia Kartsaki, Maria Chatzimina, Michalis Zervakis, Manolis Tsiknakis, Despoina Vassou, Dimitris Kafetzopoulos, Kostas Marias, Vassilis Moustakis, George Potamias
Software Mentions: 5
Published: about 8 years ago
10.1038/s41598-020-61177-x
RNA-seq analysis reveals TRPC genes to impact an unexpected number of metabolic and regulatory pathwaysCited by: 10
Author(s): Karina Formoso, Sebastián Susperreguy, Marc Freichel, Lutz Birnbaumer
Software Mentions: 4
Published: over 4 years ago
10.3390/biomedicines9070829
Biphasic Effects of Blue Light Irradiation on Human Umbilical Vein Endothelial CellsCited by: 4
Author(s): Kejia Kan, Yi-Fei Mu, Marielle Bouschbacher, Carsten Sticht, Natalia Kuch, Martin Sigl, Nuh N. Rahbari, Norbert Gretz, Prama Pallavi, Michael Keese
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0126859
Increased Expression of Angiogenic and Inflammatory Proteins in the Vitreous of Patients with Ischemic Central Retinal Vein OcclusionCited by: 42
Author(s): Christoph Ehlken, Bastian Grundel, Daniel de Sousa Michels, Bernd Junker, Andreas Stahl, Günther Schlunck, Lutz L. Hansen, Nicolas Feltgen, Gottfried Martin, Hansjürgen Agostini, Amelie Pielen
Software Mentions: 3
Published: over 9 years ago
10.3389/fcell.2020.00387
Pro-angiogenic Activity Discriminates Human Adipose-Derived Stromal Cells From Retinal Pericytes: Considerations for Cell-Based Therapy of Diabetic RetinopathyCited by: 10
Author(s): Heiner Kremer, Julian Gebauer, Susanne Elvers-Hornung, Stefanie Uhlig, Hans‐Peter Hammes, Elena Beltramo, Lothar Steeb, Martin C. Harmsen, Carsten Sticht, H. Klueter, Karen Bieback, Agnese Fiori
Software Mentions: 1
Published: over 4 years ago
10.3389/fimmu.2020.00664
Thymoma Associated Myasthenia Gravis (TAMG): Differential Expression of Functional Pathways in Relation to MG Status in Different Thymoma HistotypesCited by: 21
Author(s): Yosuke Yamada, Cleo–Aron Weis, Julian Thelen, Carsten Sticht, Berthold Schalke, Philipp Ströbel, Alexander Marx
Software Mentions: 1
Published: over 4 years ago
10.3389/fneur.2020.00692
Longitudinal Stroke Recovery Associated With Dysregulation of Complement System—A Proteomics Pathway AnalysisCited by: 7
Author(s): Vinh Nguyen, Nina Riddell, Sheila G. Crewther, Pierre Faou, Harinda Rajapaksha, David W. Howells, Graeme J. Hankey, Tissa Wijeratne, Henry Ma, Stephen M. Davis, Geoffrey A. Donnan, Leeanne Carey
Software Mentions: 1
Published: over 4 years ago