Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1093/bib/bbz158
https://doi.org/10.1093/bib/bbz158
Cited by: 74
Author(s): Ludwig Geistlinger, Gergely Csaba, Mara Santarelli, Marcel Ramos, Lucas Schiffer, Nitesh Turaga, Charity W. Law, Sean Davis, Vincent J. Carey, Martin Morgan, Ralf Zimmer, Levi Waldron
Published: about 4 years ago
Software Mentions 13
bioconductor: CAMERA
Collection of annotation related methods for mass spectrometry dataPapers that mentioned: 429
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics dataPapers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: EnrichmentBrowser
Seamless navigation through combined results of set-based and network-based enrichment analysisPapers that mentioned: 12
bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq dataPapers that mentioned: 893
bioconductor: PADOG
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)Papers that mentioned: 19
bioconductor: vsn
Variance stabilization and calibration for microarray dataPapers that mentioned: 91
pypi: GSA
Python Package to implement Gravitational Search Algorithm. Documentation at:https://github.com/deepanshu1999/GSAPapers that mentioned: 285
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.Papers that mentioned: 893