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Papers: 10.1186/s12859-015-0751-5

https://doi.org/10.1186/s12859-015-0751-5

Comparative study on gene set and pathway topology-based enrichment methods

Cited by: 61
Author(s): Michaela Bayerlová, Klaus Jung, Frank Krämer, Florian Klemm, Annalen Bleckmann, Tim Beißbarth
Published: almost 10 years ago

Software Mentions 6

bioconductor: CAMERA
Collection of annotation related methods for mass spectrometry data
Papers that mentioned: 429
Very Likely Science (75)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
bioconductor: PathNet
An R package for pathway analysis using topological information
Papers that mentioned: 13
Very Likely Science (100)
bioconductor: rBiopaxParser
Parses BioPax files and represents them in R
Papers that mentioned: 7
Very Likely Science (100)
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
Very Likely Science (100)
cran: CePa
Centrality-Based Pathway Enrichment
Papers that mentioned: 22
Very Likely Science (87)