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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Projects: bioconductor: rBiopaxParser

https://packages.ecosyste.ms/registries/bioconductor.org/packages/rBiopaxParser

Parses BioPax files and represents them in R
1 version
Latest release: almost 2 years ago
3 dependent packages
29,989 downloads total

Enhanced Analysis
Repository Activity:
Repository Owner: frankkramer-lab (organization) Academic
README Analysis:
Science Score: 100/100
Starting Score: 100 points
Bonuses:
  • +8 Academic maintainer emails
    1 maintainers with academic email addresses
  • +20 Academic repository owner
    Repository owned by academic institution
  • +15 Institutional repository owner
    Repository owned by research institution
  • +10 Science terms in README
    5 scientific terms found in README
Penalties:
  • -15 No science keywords
    No scientific terms found in keywords/classifiers
  • -10 No science terms in description
    No scientific terms found in description
Very Likely Science (100)

Papers Mentioning rBiopaxParser 7

10.3390/metabo9100200
The metaRbolomics Toolbox in Bioconductor and beyond
Cited by: 61
Author(s): Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy A. Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Michael Rainer, Reza M. Salek, Tobias Schulze, Emma L. Schymanski, Michael A. Stravs, Etienne Thévenot, Hendrik Treutler, Ralf Weber, Egon Willighagen, Michael Witting, Steffen Neumann
Software Mentions: 92
Published: almost 6 years ago
10.3390/biology3010085
R-Based Software for the Integration of Pathway Data into Bioinformatic Algorithms
Cited by: 17
Author(s): Frank Krämer, Michaela Bayerlová, Tim Beißbarth
Software Mentions: 28
Published: over 11 years ago
10.3389/fbioe.2020.00034
A Guide to Conquer the Biological Network Era Using Graph Theory
Cited by: 129
Author(s): Mikaela Koutrouli, Evangelos Karatzas, David Páez-Espino, Georgios A. Pavlopoulos
Software Mentions: 11
Published: over 5 years ago
10.1186/s12859-015-0751-5
Comparative study on gene set and pathway topology-based enrichment methods
Cited by: 61
Author(s): Michaela Bayerlová, Klaus Jung, Frank Krämer, Florian Klemm, Annalen Bleckmann, Tim Beißbarth
Software Mentions: 6
Published: almost 10 years ago
10.12688/f1000research.5499.1
Visualisation of BioPAX Networks using BioLayout Express3D
Cited by: 16
Author(s): Derek W. Wright, Tim Angus, Anton J. Enright, Tom C. Freeman
Software Mentions: 5
Published: almost 11 years ago
10.1186/s12864-016-3066-7
Path2enet: generation of human pathway-derived networks in an expression specific context
Cited by: 1
Author(s): Conrad Droste, Javier De Las Rivas
Software Mentions: 3
Published: almost 9 years ago
10.12688/f1000research.9582.2
Building pathway graphs from BioPAX data in R
Cited by: 4
Author(s): Nirupama Benis, Dirkjan Schokker, Frank Krämer, M.A. Smits, María Suárez-Diez
Software Mentions: 2
Published: over 8 years ago