Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: rBiopaxParser
https://packages.ecosyste.ms/registries/bioconductor.org/packages/rBiopaxParser
Parses BioPax files and represents them in R
1 version
Latest release: about 1 year ago
3 dependent packages
29,989 downloads total
Papers Mentioning rBiopaxParser 7
10.3390/metabo9100200
The metaRbolomics Toolbox in Bioconductor and beyondCited by: 61
Author(s): Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy A. Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Michael Rainer, Reza M. Salek, Tobias Schulze, Emma L. Schymanski, Michael A. Stravs, Etienne Thévenot, Hendrik Treutler, Ralf Weber, Egon Willighagen, Michael Witting, Steffen Neumann
Software Mentions: 92
Published: about 5 years ago
10.3390/biology3010085
R-Based Software for the Integration of Pathway Data into Bioinformatic AlgorithmsCited by: 17
Author(s): Frank Krämer, Michaela Bayerlová, Tim Beißbarth
Software Mentions: 28
Published: almost 11 years ago
10.3389/fbioe.2020.00034
A Guide to Conquer the Biological Network Era Using Graph TheoryCited by: 129
Author(s): Mikaela Koutrouli, Evangelos Karatzas, David Páez-Espino, Georgios A. Pavlopoulos
Software Mentions: 11
Published: almost 5 years ago
10.1186/s12859-015-0751-5
Comparative study on gene set and pathway topology-based enrichment methodsCited by: 61
Author(s): Michaela Bayerlová, Klaus Jung, Frank Krämer, Florian Klemm, Annalen Bleckmann, Tim Beißbarth
Software Mentions: 6
Published: about 9 years ago
10.12688/f1000research.5499.1
Visualisation of BioPAX Networks using BioLayout Express3DCited by: 16
Author(s): Derek W. Wright, Tim Angus, Anton J. Enright, Tom C. Freeman
Software Mentions: 5
Published: about 10 years ago
10.1186/s12864-016-3066-7
Path2enet: generation of human pathway-derived networks in an expression specific contextCited by: 1
Author(s): Conrad Droste, Javier De Las Rivas
Software Mentions: 3
Published: about 8 years ago
10.12688/f1000research.9582.2
Building pathway graphs from BioPAX data in RCited by: 4
Author(s): Nirupama Benis, Dirkjan Schokker, Frank Krämer, M.A. Smits, María Suárez-Diez
Software Mentions: 2
Published: almost 8 years ago