Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fbioe.2020.00034

https://doi.org/10.3389/fbioe.2020.00034

Cited by: 129
Author(s): Mikaela Koutrouli, Evangelos Karatzas, David Páez-Espino, Georgios A. Pavlopoulos
Published: over 4 years ago

Software Mentions 11

bioconductor: ArrayExpress

Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: rBiopaxParser

Parses BioPax files and represents them in R
Papers that mentioned: 7

bioconductor: rsbml

R support for SBML, using libsbml
Papers that mentioned: 3

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: igraph

Network Analysis and Visualization
Papers that mentioned: 1,555

cran: MiST

Mixed effects Score Test for continuous outcomes
Papers that mentioned: 54

cran: NAP

Non-Local Alternative Priors in Psychology
Papers that mentioned: 17

cran: pathfindR

Enrichment Analysis Utilizing Active Subnetworks
Papers that mentioned: 19

pypi: Circos

Circos plots in Python!
Papers that mentioned: 2,252

pypi: igraph

High performance graph data structures and algorithms
Papers that mentioned: 1,555