Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: NAP

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/NAP

Non-Local Alternative Priors in Psychology
2 versions
Latest release: almost 3 years ago
101 downloads last month

Papers Mentioning NAP 17

NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks
Cited by: 28
Author(s): Θεοδόσιος Θεοδοσίου, Georgios Efstathiou, Nikolas Papanikolaou, Nikos C. Kyrpides, Pantelis G. Bagos, Ioannis Iliopoulos, Georgios A. Pavlopoulos
Software Mentions: 11
Published: over 7 years ago

10.3389/fbioe.2020.00034

A Guide to Conquer the Biological Network Era Using Graph Theory
Cited by: 129
Author(s): Mikaela Koutrouli, Evangelos Karatzas, David Páez-Espino, Georgios A. Pavlopoulos
Software Mentions: 11
Published: almost 5 years ago

10.1093/gigascience/giy014

Bipartite graphs in systems biology and medicine: a survey of methods and applications
Cited by: 116
Author(s): Georgios A. Pavlopoulos, Panagiota I. Kontou, Athanasia Pavlopoulou, Costas Bouyioukos, Evripides Markou, Pantelis G. Bagos
Software Mentions: 10
Published: almost 7 years ago

10.3390/biom11081245

Biomolecule and Bioentity Interaction Databases in Systems Biology: A Comprehensive Review
Cited by: 16
Author(s): Fotis A. Baltoumas, Sofia Zafeiropoulou, Evangelos Karatzas, Mikaela Koutrouli, Foteini Thanati, Kleanthi Voutsadaki, Maria Gkonta, Joana Hotova, Ioannis Kasionis, Pantelis Hatzis, Georgios A. Pavlopoulos
Software Mentions: 7
Published: over 3 years ago

10.3389/fpls.2021.693739

Comparative Metabolomics of Fruits and Leaves in a Hyperdiverse Lineage Suggests Fruits Are a Key Incubator of Phytochemical Diversification
Cited by: 11
Author(s): Gerald Schneider, Diego Salazar, Sherry B. Hildreth, Richard Helm, Susan R. Whitehead
Software Mentions: 7
Published: about 3 years ago

10.1371/journal.pcbi.1006089

Propagating annotations of molecular networks using in silico fragmentation
Cited by: 216
Author(s): Ricardo R. da Silva, Mingxun Wang, Louis Félix Nothias, Justin J. J. van der Hooft, Andrés Mauricio Caraballo‐Rodríguez, Evan Fox, Marcy J. Balunas, Jonathan L. Klassen, Norberto Peporine Lopes, Pieter C. Dorrestein
Software Mentions: 3
Published: over 6 years ago

10.3390/md19070397

Metabolomic Characterization of a cf. Neolyngbya Cyanobacterium from the South China Sea Reveals Wenchangamide A, a Lipopeptide with In Vitro Apoptotic Potential in Colon Cancer Cells
Cited by: 5
Author(s): Lijian Ding, Rinat Bar-Shalom, Dikla Aharonovich, Naoaki Kurisawa, Gaurav Patial, Shuang Li, Shan He, Xiaojun Yan, Arihiro Iwasaki, Kiyotake Suenaga, Cheng-Cong Zhu, Haixi Luo, Fuli Tian, Fuad Fares, C. Benjamin Naman, Tal Luzzatto-Knaan
Software Mentions: 2
Published: over 3 years ago

10.1186/s12862-020-01703-7

A phylogenomic study of Steganinae fruit flies (Diptera: Drosophilidae): strong gene tree heterogeneity and evidence for monophyly
Cited by: 4
Author(s): Guilherme Dias, Eduardo Guimarães Dupim, Thyago Vanderlinde, Beatriz Mello, Antonio Bernardo Carvalho
Software Mentions: 2
Published: about 4 years ago

10.1128/mSystems.00824-20

Chemical Profiling Provides Insights into the Metabolic Machinery of Hydrocarbon-Degrading Deep-Sea Microbes
Cited by: 15
Author(s): Aldo Moreno‐Ulloa, Victoria Sicairos Diaz, Javier A. Tejeda-Mora, Marla I. Macias Contreras, Fernando Díaz Castillo, Abraham Guerrero, Ricardo González Sánchez, Omar Mendoza‐Porras, Rafael Vázquez Duhalt, Alexei F. Licea-Navarro
Software Mentions: 2
Published: almost 4 years ago

10.3390/plants10081711

Investigation of Chemical Profiles of Different Parts of Morus alba Using a Combination of Molecular Networking Methods with Mass Spectral Data from Two Ionization Modes of LC/MS
Cited by: 6
Author(s): Seong Yeon Choi, Jin‐Young Park, Juyeol Kim, Jiho Lee, Heejung Yang
Software Mentions: 1
Published: over 3 years ago

10.1155/2015/248724

FC-NIRS: A Functional Connectivity Analysis Tool for Near-Infrared Spectroscopy Data
Cited by: 59
Author(s): Jingping Xu, Xiangyu Liu, Jinrui Zhang, Zhen Li, Xindi Wang, Fang Fang, Haijing Niu
Software Mentions: 1
Published: almost 10 years ago

10.3390/metabo9070144

MolNetEnhancer: Enhanced Molecular Networks by Integrating Metabolome Mining and Annotation Tools
Cited by: 228
Author(s): Madeleine Ernst, Kyo Bin Kang, Andrés Mauricio Caraballo‐Rodríguez, Louis Félix Nothias, Joe Wandy, Christopher Chen, Mingxun Wang, Simon Rogers, Marnix H. Medema, Pieter C. Dorrestein, Justin J. J. van der Hooft
Software Mentions: 1
Published: over 5 years ago

10.3390/metabo11040239

Specialized Metabolites from Ribosome Engineered Strains of Streptomyces clavuligerus
Cited by: 8
Author(s): Arshad Ali Shaikh, Louis‐Félix Nothias, Santosh K. Srivastava, Pieter C. Dorrestein, Kapil Tahlan
Software Mentions: 1
Published: over 3 years ago

10.1186/s12915-020-00781-9

NetConfer: a web application for comparative analysis of multiple biological networks
Cited by: 9
Author(s): Sunil Nagpal, Krishanu Das Baksi, Bhusan K. Kuntal, Sharmila S. Mande
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0024322

The NIRS Analysis Package: Noise Reduction and Statistical Inference
Cited by: 103
Author(s): Tomer Fekete, Denis Rubin, Joshua M. Carlson, Lilianne R. Mujica‐Parodi
Software Mentions: 1
Published: about 13 years ago

10.3389/fpsyt.2020.00846

Modeling Incoherent Discourse in Non-Affective Psychosis
Cited by: 14
Author(s): Sandra Just, Erik Haegert, Nora Kořánová, Anna‐Lena Bröcker, Ivan Nenchev, Jakob Funcke, Andreas Heinz, Felix Bermpohl, Manfred Stede, Christiane Montag
Software Mentions: 1
Published: over 4 years ago

10.1007/s00127-018-1552-8

Social networks and symptomatic and functional outcomes in schizophrenia: a systematic review and meta-analysis
Cited by: 133
Author(s): Amy Degnan, Katherine Berry, Daryl Sweet, Kathryn M. Abel, Nick Crossley, Dawn Edge
Software Mentions: 1
Published: over 6 years ago