Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fphys.2013.00278

https://doi.org/10.3389/fphys.2013.00278

Methods and approaches in the topology-based analysis of biological pathways

Cited by: 162
Author(s): Cristina Mitrea, Zeinab Taghavi, Behzad Bokanizad, Samer Najeeb Hanoudi, Rebecca Tagett, Michèle Donato, Călin Voichiţa, Sorin Drăghici
Published: over 11 years ago

Software Mentions 9

bioconductor: DEGraph
Two-sample tests on a graph
Papers that mentioned: 15
bioconductor: GlobalAncova
Global test for groups of variables via model comparisons
Papers that mentioned: 14
bioconductor: PADOG
Pathway Analysis with Down-weighting of Overlapping Genes (PADOG)
Papers that mentioned: 19
bioconductor: ROntoTools
R Onto-Tools suite
Papers that mentioned: 7
bioconductor: SPIA
Signaling Pathway Impact Analysis (SPIA) using combined evidence of pathway over-representation and unusual signaling perturbations
Papers that mentioned: 155
cran: CePa
Centrality-Based Pathway Enrichment
Papers that mentioned: 22
cran: GANPA
Gene Association Network-Based Pathway Analysis (GANPA)
Papers that mentioned: 8
cran: GSA
Gene Set Analysis
Papers that mentioned: 285
pypi: GSA
Python Package to implement Gravitational Search Algorithm. Documentation at:https://github.com/deepanshu1999/GSA
Papers that mentioned: 285