Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: PCAtools
https://packages.ecosyste.ms/registries/bioconductor.org/packages/PCAtools
PCAtools: Everything Principal Components Analysis
1 version
Latest release: 12 months ago
1 dependent package
56,409 downloads total
Papers Mentioning PCAtools 20
10.1084/jem.20201795
Diagnostic blood RNA profiles for human acute spinal cord injuryCited by: 21
Author(s): Nikos Kyritsis, Abel Torres-Espín, Patrick G. Schupp, J. Russell Huie, Austin Chou, Xuan Duong Fernandez, Libby Thomas, Rachel Tsolinas, Debra D. Hemmerle, Lisa U. Pascual, Vineeta Singh, Jonathan Z. Pan, Jason F. Talbott, William D. Whetstone, John F. Burke, Anthony M DiGiorgio, Philip Weinstein, Geoffrey T. Manley, Sanjay S. Dhall, Adam R. Ferguson, Michael C. Oldham, Jacqueline C. Bresnahan, Michael S. Beattie
Software Mentions: 19
Published: over 3 years ago
10.3390/ijms22073681
Circulating miRNAs as Biomarkers for Mitochondrial Neuro-Gastrointestinal EncephalomyopathyCited by: 4
Author(s): Mark Mencias, Michelle Levene, Kevin Blighe, Bridget E. Bax
Software Mentions: 14
Published: over 3 years ago
10.3390/jcm9113643
Diabetic Retinopathy Environment-Wide Association Study (EWAS) in NHANES 2005–2008Cited by: 10
Author(s): Kevin Blighe, Sarega Gurudas, Ying Lee, Sobha Sivaprasad
Software Mentions: 11
Published: almost 4 years ago
10.7554/eLife.62250
Age-related changes in polycomb gene regulation disrupt lineage fidelity in intestinal stem cellsCited by: 11
Author(s): Helen M Tauc, Imilce A. Rodriguez‐Fernandez, Jason A. Hackney, Michał Pawlak, Tal Oron, Jerome Korzelius, Hagar F. Moussa, Subhra Chaudhuri, Zora Modrušan, Bruce A Edgar, Heinrich Jasper
Software Mentions: 10
Published: over 3 years ago
10.3390/cancers13092126
Genome-Wide Chromatin Analysis of FFPE Tissues Using a Dual-Arm Robot with Clinical PotentialCited by: 7
Author(s): Syuzo Kaneko, Toutai Mitsuyama, Kouya Shiraishi, Noriko Ikawa, Kanto Shozu, Ai Dozen, Hidenori Machino, Ken Asada, Masaaki Komatsu, Asako Kukita, Kenbun Sone, Hiroshi Yoshida, Noriko Motoi, Shinya Hayami, Yutaka Yoneoka, Tomoyasu Kato, Takashi Kohno, Toru Natsume, Gottfried von Keudell, Vassiliki Saloura, Hiroki Yamaue, Ryuji Hamamoto
Software Mentions: 7
Published: over 3 years ago
10.3390/cancers13051136
Nanopore Sequencing Reveals Global Transcriptome Signatures of Mitochondrial and Ribosomal Gene Expressions in Various Human Cancer Stem-like Cell PopulationsCited by: 13
Author(s): Kaya E. Witte, Oliver Hertel, Beatrice A. Windmöller, Laureen P. Helweg, Anna L. Höving, Cornelius Knabbe, Tobias Busche, Johannes F. W. Greiner, Jörn Kalinowski, Thomas Noll, F. Mertzlufft, Morris Beshay, Jesco Pfitzenmaier, Barbara Kaltschmidt, Christian Kaltschmidt, Constanze Banz‐Jansen, Matthias Simon
Software Mentions: 6
Published: over 3 years ago
10.1038/s41598-021-92439-x
The amniotic fluid cell-free transcriptome in spontaneous preterm laborCited by: 11
Author(s): Gaurav Bhatti, Roberto Romero, Nardhy Gómez-López, Roger Piqué-Regi, Percy Pacora, Eun-Jung Jung, Lami Yeo, Chaur‐Dong Hsu, Mahendra Kavdia, Adi L. Tarca
Software Mentions: 6
Published: over 3 years ago
10.1186/s12864-021-07443-2
Investigating mechanisms underlying genetic resistance to Salmon Rickettsial Syndrome in Atlantic salmon using RNA sequencingCited by: 12
Author(s): Carolina P. Moraleda, Diego Robledo, Alejandro P. Gutiérrez, Jorge Del‐Pozo, José M. Yáñez, Ross D. Houston
Software Mentions: 6
Published: over 3 years ago
10.1111/joa.13228
Morphological variability is greater at developing than mature mouse neuromuscular junctionsCited by: 24
Author(s): Aleksandra M. Mech, Anna‐Leigh Brown, Giampietro Schiavo, James N. Sleigh
Software Mentions: 5
Published: over 4 years ago
10.3390/jof7070562
mRNA Inventory of Extracellular Vesicles from Ustilago maydisCited by: 21
Author(s): Seomun Kwon, Oliver Rupp, Andreas Brachmann, Christopher Blum, Anton Kraege, Alexander Goesmann, Michael Feldbrügge
Software Mentions: 5
Published: about 3 years ago
10.1038/s41598-020-68373-9
Increased predominance of the matured ventricular subtype in embryonic stem cell-derived cardiomyocytes in vivoCited by: 22
Author(s): Hajime Ichimura, Shin Kadota, Toshihide Kashihara, Mitsuhiko Yamada, Kyoko Ito, Hideki Kobayashi, Yuki Tanaka, Naoko Shiba, Shinichiro Chuma, Shugo Tohyama, Takashi Seto, Kenji Okada, Koichiro Kuwahara, Yuji Shiba
Software Mentions: 4
Published: about 4 years ago
10.1186/s12870-021-02977-9
Differential expressions of anthocyanin synthesis genes underlie flower color divergence in a sympatric Rhododendron sanguineum complexCited by: 14
Author(s): Lin-Jiang Ye, Michael Möller, Ya‐Huang Luo, Jia‐Yun Zou, Wei Zheng, Yuehua Wang, Jie Liu, Andan Zhu, Jin‐Yong Hu, Li D, Lian‐Ming Gao
Software Mentions: 4
Published: over 3 years ago
10.1186/s12864-020-07327-x
Gene expression patterns of red sea urchins (Mesocentrotus franciscanus) exposed to different combinations of temperature and pCO2 during early developmentCited by: 5
Author(s): Juliet M. Wong, Gretchen E. Hofmann
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-82853-6
Transcriptome comparisons of in vitro intestinal epithelia grown under static and microfluidic gut-on-chip conditions with in vivo human epitheliaCited by: 19
Author(s): Kornphimol Kulthong, Guido Hooiveld, Loes P. M. Duivenvoorde, Ignacio Miro Estruch, Victor Augustus Marin, Meike van der Zande, Hans Bouwmeester
Software Mentions: 4
Published: over 3 years ago
10.1186/s13068-021-02032-7
Genome-wide association study and transcriptome analysis reveal key genes affecting root growth dynamics in rapeseedCited by: 17
Author(s): Keqi Li, Jie Wang, Lieqiong Kuang, Ze Tian, Xinfa Wang, Xiaoling Dun, Jinxing Tu, Hanzhong Wang
Software Mentions: 3
Published: about 3 years ago
10.1186/s13287-020-02047-1
Targeted expression profiling reveals distinct stages of early canine fibroblast reprogramming are regulated by 2-oxoglutarate hydroxylasesCited by: 6
Author(s): Ian C Tobias, Mian-Mian C. Kao, Thomas Parmentier, Hailey Hunter, Jonathan LaMarre, Dean H. Betts
Software Mentions: 2
Published: almost 4 years ago
10.3389/fimmu.2019.01965
Systemic Inflammation and the Increased Risk of Inflamm-Aging and Age-Associated Diseases in People Living With HIV on Long Term Suppressive Antiretroviral TherapyCited by: 65
Author(s): Hemalatha Babu, Anoop T. Ambikan, Erin E. Gabriel, Sara Svensson Akusjärvi, Alangudi Natarajan Palaniappan, Vijila Sundaraj, Naveen Reddy Mupanni, Maike Sperk, Narayanaiah Cheedarla, Sridhar Ramaswamy, Srikanth Tripathy, Piotr Nowak, Luke Elizabeth Hanna, Ujjwal Neogi
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-020-80040-7
Mitochondrial haplogroup J associated with higher risk of obesity in the Qatari populationCited by: 4
Author(s): Mohammed Dashti, Hussain Alsaleh, Juan L. Rodríguez-Flores, Muthukrishnan Eaaswarkhanth, Fahd Al-Mulla, Thangavel Alphonse Thanaraj
Software Mentions: 1
Published: over 3 years ago
10.7554/eLife.54363
Characterising a healthy adult with a rare HAO1 knockout to support a therapeutic strategy for primary hyperoxaluriaCited by: 42
Author(s): Tracy L. McGregor, Karen A. Hunt, Elaine Yee, Dan Mason, Paul Nioi, Simina Ticau, Marissa Pelosi, Perry R Loken, Sarah Finer, Deborah A Lawlor, Eric B. Fauman, Qin Qin Huang, Debabrata Bandyopadhyay, Daniel G. MacArthur, Richard Trembath, Devin Oglesbee, John C. Lieske, David V. Erbe, John Wright, David A. van Heel
Software Mentions: 1
Published: over 4 years ago
10.1038/s42003-020-01642-5
Circulating extracellular vesicles release oncogenic miR-424 in experimental models and patients with aggressive prostate cancerCited by: 17
Author(s): Domenico Albino, Martina Falcione, Valeria Uboldi, Dada Oluwaseyi Temilola, Giada Sandrini, Jessica Merulla, Gianluca Civenni, Aleksandra Kokanovic, Alessandra Stürchler, Dheeraj Shinde, Mariangela Garofalo, Ricardo Pereira Mestre, Vera Constâncio, Martha Wium, Jacopo Burrello, Nicolò Baranzini, Annalisa Grimaldi, Jean-Philippe Theurillat, Daniela Bossi, Lucio Barile, Rui Henrique, Carmen Jerónimo, Luiz Fernando Zerbini, Carlo V. Catapano, Giuseppina M. Carbone
Software Mentions: 1
Published: over 3 years ago