Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.62250

https://doi.org/10.7554/eLife.62250

Age-related changes in polycomb gene regulation disrupt lineage fidelity in intestinal stem cells

Cited by: 11
Author(s): Helen M Tauc, Imilce A. Rodriguez‐Fernandez, Jason A. Hackney, Michał Pawlak, Tal Oron, Jerome Korzelius, Hagar F. Moussa, Subhra Chaudhuri, Zora Modrušan, Bruce A Edgar, Heinrich Jasper
Published: over 3 years ago

Software Mentions 10

bioconductor: EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
Papers that mentioned: 123
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignments
Papers that mentioned: 134
bioconductor: HTSeqGenie
A NGS analysis pipeline.
Papers that mentioned: 12
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: PCAtools
PCAtools: Everything Principal Components Analysis
Papers that mentioned: 20
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
pypi: deepTools
Useful tools for exploring deep sequencing data.
Papers that mentioned: 435
pypi: garnett
Samples, parsers, and writers for formats used in the Glotzer Group.
Papers that mentioned: 1
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203