Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.7554/eLife.62250

https://doi.org/10.7554/eLife.62250

Cited by: 11
Author(s): Helen M Tauc, Imilce A. Rodriguez‐Fernandez, Jason A. Hackney, Michał Pawlak, Tal Oron, Jerome Korzelius, Hagar F. Moussa, Subhra Chaudhuri, Zora Modrušan, Bruce A Edgar, Heinrich Jasper
Published: about 3 years ago

Software Mentions 10

bioconductor: EnhancedVolcano

Publication-ready volcano plots with enhanced colouring and labeling
Papers that mentioned: 123

bioconductor: fgsea

Fast Gene Set Enrichment Analysis
Papers that mentioned: 150

bioconductor: GenomicAlignments

Representation and manipulation of short genomic alignments
Papers that mentioned: 134

bioconductor: HTSeqGenie

A NGS analysis pipeline.
Papers that mentioned: 12

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: PCAtools

PCAtools: Everything Principal Components Analysis
Papers that mentioned: 20

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

pypi: deepTools

Useful tools for exploring deep sequencing data.
Papers that mentioned: 435

pypi: garnett

Samples, parsers, and writers for formats used in the Glotzer Group.
Papers that mentioned: 1

pypi: MACS2

Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203