Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s42003-021-01796-w

https://doi.org/10.1038/s42003-021-01796-w

Temporal association between human upper respiratory and gut bacterial microbiomes during the course of COVID-19 in adults

Cited by: 73
Author(s): Rong Xu, Renfei Lu, Tao Zhang, Qian Wu, Wei Cai, Xudong Han, Zhenzhou Wan, Xia Jin, Zhigang Zhang, Chiyu Zhang
Published: over 3 years ago

Software Mentions 15

cran: ade4
Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences
Papers that mentioned: 809
cran: ggalluvial
Alluvial Plots in 'ggplot2'
Papers that mentioned: 57
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: indicspecies
Relationship Between Species and Groups of Sites
Papers that mentioned: 218
cran: lattice
Trellis Graphics for R
Papers that mentioned: 251
cran: permute
Functions for Generating Restricted Permutations of Data
Papers that mentioned: 11
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: RDP
The Ramer-Douglas-Peucker Algorithm
Papers that mentioned: 1,243
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
pypi: grid
Volumetric data module
Papers that mentioned: 137
pypi: lattice
A framework for developing data models, including schema development and documentation.
Papers that mentioned: 251
pypi: permute
Permutation tests and confidence sets for Python
Papers that mentioned: 11
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92