Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: permute

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/permute

Functions for Generating Restricted Permutations of Data
11 versions
Latest release: almost 3 years ago
30 dependent packages
73,186 downloads last month

Papers Mentioning permute 11

Distinct Oceanic Microbiomes From Viruses to Protists Located Near the Antarctic Circumpolar Current
Cited by: 24
Author(s): Flavia Flaviani, Declan C. Schroeder, Karen Lebret, Cecilia Balestreri, Andrea Highfield, Joanna L. Schroeder, Sally Thorpe, Karen Moore, Konrad Pasckiewicz, Maya C. Pfaff, Edward P. Rybicki
Software Mentions: 27
Published: over 6 years ago

10.1080/19490976.2021.1940792

Antibiotic-driven intestinal dysbiosis in pediatric short bowel syndrome is associated with persistently altered microbiome functions and gut-derived bloodstream infections
Cited by: 13
Author(s): Robert Thänert, Anna Thänert, Jocelyn Ou, Adam Bajinting, Carey Ann D. Burnham, Holly J. Engelstad, Maria E. Tecos, I. Malick Ndao, Carla Hall-Moore, Colleen Rouggly-Nickless, Mike A. Carl, Deborah C. Rubin, Nicholas O. Davidson, Phillip I. Tarr, Barbara B. Warner, Gautam Dantas, Brad W. Warner
Software Mentions: 22
Published: almost 4 years ago

10.1038/s42003-021-01796-w

Temporal association between human upper respiratory and gut bacterial microbiomes during the course of COVID-19 in adults
Cited by: 73
Author(s): Rong Xu, Renfei Lu, Tao Zhang, Qian Wu, Wei Cai, Xudong Han, Zhenzhou Wan, Xia Jin, Zhigang Zhang, Chiyu Zhang
Software Mentions: 15
Published: almost 4 years ago

10.1186/s42523-020-00027-7

Domesticated equine species and their derived hybrids differ in their fecal microbiota
Cited by: 18
Author(s): Joan E. Edwards, A. Schennink, Faith Burden, Stuart A. Long, D.A. van Doorn, W.F. Pellikaan, J. Dijkstra, Edoardo Saccenti, Hauke Smidt
Software Mentions: 14
Published: over 4 years ago

10.1186/s42523-020-0023-1

Multi-kingdom characterization of the core equine fecal microbiota based on multiple equine (sub)species
Cited by: 31
Author(s): Joan E. Edwards, Sudarshan A. Shetty, Pim van den Berg, Faith Burden, D.A. van Doorn, W.F. Pellikaan, J. Dijkstra, Hauke Smidt
Software Mentions: 13
Published: almost 5 years ago

10.1038/s41598-021-94198-1

Unraveling the ecological processes modulating the population structure of Escherichia coli in a highly polluted urban stream network
Cited by: 7
Author(s): Martín Saraceno, Sebastián Gómez Lugo, Nicolás Ortiz, Bárbara Marion Gomez, Carmen A. Sabio y García, Nicolás Frankel, Martín Graziano
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pone.0167265

Evidence of Facilitation Cascade Processes as Drivers of Successional Patterns of Ecosystem Engineers at the Upper Altitudinal Limit of the Dry Puna
Cited by: 13
Author(s): Luca Malatesta, Federico Maria Tardella, Karina Piermarteri, Andrea Catorci
Software Mentions: 7
Published: almost 8 years ago

10.3389/fmicb.2019.00659

The Majority of Active Rhodobacteraceae in Marine Sediments Belong to Uncultured Genera: A Molecular Approach to Link Their Distribution to Environmental Conditions
Cited by: 62
Author(s): Marion Pohlner, Leon Dlugosch, Bernd Wemheuer, Heath J. Mills, Bert Engelen, Brandi Kiel Reese
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pone.0072779

Biogeography of Deep-Sea Benthic Bacteria at Regional Scale (LTER HAUSGARTEN, Fram Strait, Arctic)
Cited by: 53
Author(s): Marianne Jacob, Thomas Soltwedel, Antje Boetius, Alban Ramette
Software Mentions: 4
Published: about 11 years ago

10.1371/journal.pone.0124467

A Four-Compartment Metabolomics Analysis of the Liver, Muscle, Serum, and Urine Response to Polytrauma with Hemorrhagic Shock following Carbohydrate Prefeed
Cited by: 15
Author(s): Nancy E. Witowski, Elizabeth R. Lusczek, Charles Determan, Daniel R. Lexcen, Kristine E. Mulier, Beverly Gaul Ostrowski, Greg J. Beilman
Software Mentions: 4
Published: over 9 years ago

10.1186/1471-2148-12-249

The fester locus in Botryllus schlosseri experiences selection
Cited by: 10
Author(s): Marie L. Nydam, Anthony W. De Tomaso
Software Mentions: 2
Published: almost 13 years ago