Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s42523-020-0023-1

https://doi.org/10.1186/s42523-020-0023-1

Multi-kingdom characterization of the core equine fecal microbiota based on multiple equine (sub)species

Cited by: 31
Author(s): Joan E. Edwards, Sudarshan A. Shetty, Pim van den Berg, Faith Burden, D.A. van Doorn, W.F. Pellikaan, J. Dijkstra, Hauke Smidt
Published: almost 5 years ago

Software Mentions 13

bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: lattice
Trellis Graphics for R
Papers that mentioned: 251
cran: magrittr
A Forward-Pipe Operator for R
Papers that mentioned: 107
cran: nlme
Linear and Nonlinear Mixed Effects Models
Papers that mentioned: 3,265
cran: permute
Functions for Generating Restricted Permutations of Data
Papers that mentioned: 11
cran: picante
Integrating Phylogenies and Ecology
Papers that mentioned: 414
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: lattice
A framework for developing data models, including schema development and documentation.
Papers that mentioned: 251
pypi: permute
Permutation tests and confidence sets for Python
Papers that mentioned: 11