cran: lattice | Projects | Ecosyste.ms: Papers

10.1002/pmic.201400392

Visualization of proteomics data using R and Bioconductor
Cited by: 46
Author(s): Laurent Gatto, Lisa M. Breckels, Thomas Naake, Sebastian Gibb
Software Mentions: 62
Published: about 9 years ago

Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrations
Cited by: 16
Author(s): Robert B. Scharpf, Lynn Mireles, Qiong Yang, Anna Köttgen, Ingo Ruczinski, Katalin Suszták, Eitan Halper-Stromberg, Adrienne Tin, Stephen Cristiano, Aravinda Chakravarti, Eric Boerwinkle, Caroline S. Fox, Josef Coresh, W. H. Linda Kao
Software Mentions: 56
Published: over 10 years ago

10.1038/s41598-020-76683-1

Revisiting potential associations between brain morphology, fear acquisition and extinction through new data and a literature review
Cited by: 7
Author(s): Mana R. Ehlers, Janne Nold, Manuel Kuhn, Maren Klingelhöfer-Jens, Tina B. Lonsdorf
Software Mentions: 44
Published: over 3 years ago

10.1371/journal.pcbi.1000227

Analyzing ChIP-chip Data Using Bioconductor
Cited by: 19
Author(s): Joern Toedling, Wolfgang Huber
Software Mentions: 39
Published: over 15 years ago

10.1186/s12864-016-3387-6

HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking
Cited by: 64
Author(s): Charalampos Lazaris, Stephen M. Kelly, Panagiotis Ntziachristos, Iannis Aifantis, Aristotelis Tsirigos
Software Mentions: 28
Published: over 7 years ago

10.1084/jem.20210915

Blood transcriptomics reveal the evolution and resolution of the immune response in tuberculosis
Cited by: 27
Author(s): Olivier Tabone, Raman Verma, Akul Singhania, Probir Chakravarty, William J. Branchett, Christine M. Graham, Jo Lee, Trần Thị Huyền Trang, Frédéric Reynier, Philippe Leissner, Karine Kaiser, Marc Rodrigue, Gerrit Woltmann, Pranabashis Haldar, Anne O’Garra
Software Mentions: 27
Published: over 2 years ago

10.3390/s20247188

Which Are the Central Aspects of Infant Sleep? The Dynamics of Sleep Composites across Infancy
Cited by: 17
Author(s): Sarah F. Schoch, Reto Huber, Malcolm Kohler, Salomé Kurth
Software Mentions: 26
Published: over 3 years ago

10.1038/s41598-021-96198-7

Cross-modal auditory priors drive the perception of bistable visual stimuli with reliable differences between individuals
Cited by: 2
Author(s): Zsófia Pálffy, Kinga Farkas, Gábor Csukly, Szabolcs Kéri, Bertalan Polner
Software Mentions: 25
Published: over 2 years ago

10.1186/1751-0473-8-1

MmPalateMiRNA, an R package compendium illustrating analysis of miRNA microarray data
Cited by: 11
Author(s): Guy Brock, Partha Mukhopadhyay, Vasyl Pihur, Cynthia L. Webb, Robert M. Greene, M. Michele Pisano
Software Mentions: 24
Published: over 11 years ago

10.1371/journal.pcbi.1007792

eXplainable Artificial Intelligence (XAI) for the identification of biologically relevant gene expression patterns in longitudinal human studies, insights from obesity research
Cited by: 38
Author(s): Augusto Anguita‐Ruiz, Alberto Segura‐Delgado, Rafael Alcalá, Concepción M. Aguilera, Jesús Alcalá‐Fdez
Software Mentions: 23
Published: about 4 years ago

10.1371/journal.pone.0253950

Registered Report Protocol: Survey on attitudes and experiences regarding preregistration in psychological research
Cited by: 2
Author(s): Lisa Spitzer, Stefanie Mueller
Software Mentions: 21
Published: almost 3 years ago

10.3390/cancers12040957

Pan-Cancer Analysis of Radiotherapy Benefits and Immune Infiltration in Multiple Human Cancers
Cited by: 10
Author(s): Pengbo Wen, Yang Gao, Bin Chen, Xiaojing Qi, Guanshuo Hu, An Xu, Junfeng Xia, Lijun Wu, Lu Han, Guoping Zhao
Software Mentions: 16
Published: about 4 years ago

10.1371/journal.pone.0214640

Correlates of social role and conflict severity in wild vervet monkey agonistic screams
Cited by: 10
Author(s): Stéphanie Mercier, Éloïse C. Déaux, Erica van de Waal, Axelle Bono, Klaus Zuberbühler
Software Mentions: 16
Published: about 5 years ago

10.1371/journal.pone.0195112

Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats
Cited by: 43
Author(s): Edna Chiang, Marian L. Schmidt, Michelle A. Berry, Bopaiah A. Biddanda, Ashley M. Burtner, Thomas H. Johengen, Danna Palladino, Vincent J. Denef
Software Mentions: 16
Published: about 6 years ago

10.1371/journal.pone.0189789

An integrative framework to reevaluate the Neotropical catfish genus Guyanancistrus (Siluriformes: Loricariidae) with particular emphasis on the Guyanancistrus brevispinis complex
Cited by: 11
Author(s): Sonia Fisch-Muller, Jan H. Mol, Raphaël Covain
Software Mentions: 16
Published: over 6 years ago

10.3389/fvets.2020.00068

Near Real-Time Monitoring of Clinical Events Detected in Swine Herds in Northeastern Spain
Cited by: 3
Author(s): Ana Alba-Casals, Eduard Allue, Vicens Tarancón, Jordi Baliellas, Elena Novell, Sebastián Napp, Lorenzo Fraile
Software Mentions: 16
Published: over 4 years ago

10.1038/s42003-021-01757-3

Jaw shape and mechanical advantage are indicative of diet in Mesozoic mammals
Cited by: 20
Author(s): Nuria Melisa Morales-García, Pamela G. Gill, Christine M. Janis, Emily J. Rayfield
Software Mentions: 16
Published: about 3 years ago

10.1038/s42003-021-01796-w

Temporal association between human upper respiratory and gut bacterial microbiomes during the course of COVID-19 in adults
Cited by: 73
Author(s): Rong Xu, Renfei Lu, Tao Zhang, Qian Wu, Wei Cai, Xudong Han, Zhenzhou Wan, Xia Jin, Zhigang Zhang, Chiyu Zhang
Software Mentions: 15
Published: over 3 years ago

10.1186/s12885-021-08598-7

Cannabinoid exposure as a major driver of pediatric acute lymphoid Leukaemia rates across the USA: combined geospatial, multiple imputation and causal inference study
Cited by: 24
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 15
Published: over 2 years ago

10.1093/molbev/msab063

Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
Cited by: 42
Author(s): Olena Meleshko, Michael D. Martin, Thorfinn Sand Korneliussen, C. Schluechter, P. Lamkowski, Jeremy Schmutz, Adam Healey, Bryan Piatkowski, A. Jonathan Shaw, David J. Weston, Kjell Ivar Flatberg, Péter Szövényi, Kristian Hassel, Hans K. Stenøien
Software Mentions: 14
Published: about 3 years ago

10.1186/s42523-020-00027-7

Domesticated equine species and their derived hybrids differ in their fecal microbiota
Cited by: 18
Author(s): Joan E. Edwards, A. Schennink, Faith Burden, Stuart A. Long, D.A. van Doorn, W.F. Pellikaan, J. Dijkstra, Edoardo Saccenti, Hauke Smidt
Software Mentions: 14
Published: about 4 years ago

10.1186/s12864-016-3038-y

A full-body transcriptome and proteome resource for the European common carp
Cited by: 33
Author(s): Iris Kolder, Suzanne J. van der Plas-Duivesteijn, Ge Tan, G.F. Wiegertjes, Maria Forlenza, Arzu Güler, Dmitrii Y. Travin, Minoru Nakao, Tadaaki Moritomo, Ilgiz Irnazarow, Johan T. den Dunnen, Seyed Yahya Anvar, Hans J. Jansen, Ron P. Dirks, Magnus Palmblad, Boris Lenhard, Christiaan V. Henkel, Herman P. Spaink
Software Mentions: 14
Published: over 7 years ago

10.1002/ece3.3204

Habitat selection by Eurasian lynx (<i>Lynx lynx</i>) is primarily driven by avoidance of human activity during day and prey availability during night
Cited by: 50
Author(s): Marc Filla, Joe Premier, Nora Magg, Claudia Dupke, Igor Khorozyan, Matthias Waltert, Luděk Bufka, Marco Heurich
Software Mentions: 14
Published: almost 7 years ago

10.1371/journal.pgen.1008405

Causal relationships between obesity and the leading causes of death in women and men
Cited by: 106
Author(s): Jenny C Censin, Sanne A.E. Peters, Jonas Bovijn, Teresa Ferreira, Sara L. Pulit, Reedik Mägi, Anubha Mahajan, Michael V Holmes, Cecilia M. Lindgren
Software Mentions: 14
Published: over 4 years ago

10.3390/nu12123626

Trajectories of Body Composition during Advanced Aging in Consideration of Diet and Physical Activity: A 20-Year Longitudinal Study
Cited by: 6
Author(s): Alexandra Jungert, Gerrit Eichner, Monika Neuhäuser‐Berthold
Software Mentions: 13
Published: over 3 years ago

10.3390/curroncol28040269

Evaluating the Impact of the COVID-19 Pandemic on New Cancer Diagnoses and Oncology Care in Manitoba
Cited by: 14
Author(s): Kathleen Decker, Pascal Lambert, Allison Feely, Oliver Bucher, Julian O. Kim, Pamela Hebbard, Maclean Thiessen, Tunji Fatoye, Marshall Pitz, Rashmi Koul, Piotr Czaykowski
Software Mentions: 13
Published: almost 3 years ago

10.1186/s12939-016-0350-8

Are health care inequalities unfair? A study on public attitudes in 23 countries
Cited by: 25
Author(s): Olaf von dem Knesebeck, Nico Vonneilich, Tae Jun Kim
Software Mentions: 13
Published: about 8 years ago

10.1177/0271678X17713901

Modified structural network backbone in the contralesional hemisphere chronically after stroke in rat brain
Cited by: 21
Author(s): Michel R.T. Sinke, Willem M. Otte, Maurits Pa van Meer, Annette van der Toorn, Rick M. Dijkhuizen
Software Mentions: 13
Published: almost 7 years ago

10.1186/s42523-020-0023-1

Multi-kingdom characterization of the core equine fecal microbiota based on multiple equine (sub)species
Cited by: 31
Author(s): Joan E. Edwards, Sudarshan A. Shetty, Pim van den Berg, Faith Burden, D.A. van Doorn, W.F. Pellikaan, J. Dijkstra, Hauke Smidt
Software Mentions: 13
Published: over 4 years ago

10.3389/fmicb.2019.02597

New Insights Into Cinnamoyl Esterase Activity of Oenococcus oeni
Cited by: 9
Author(s): Ingrid Collombel, Chrats Melkonian, Douwe Molenaar, Francisco M. Campos, Tim Hogg
Software Mentions: 12
Published: over 4 years ago

10.3390/insects12020180

Unexpected Effects of Local Management and Landscape Composition on Predatory Mites and Their Food Resources in Vineyards
Cited by: 16
Author(s): Stefan Möth, Andreas Walzer, Markus Redl, Božana Petrović, Christoph Hoffmann, Silvia Winter
Software Mentions: 12
Published: about 3 years ago

10.7717/peerj.9847

Prognostic implications of metabolism-associated gene signatures in colorectal cancer
Cited by: 21
Author(s): Yifei Miao, Qiutian Li, Jiangtao Wang, Wuxia Quan, Chen Li, Yuan Yang, Denghai Mi
Software Mentions: 12
Published: over 3 years ago

10.1371/journal.pone.0204123

Prediction of early breast cancer patient survival using ensembles of hypoxia signatures
Cited by: 8
Author(s): Inna Y. Gong, Natalie S. Fox, Vincent Huang, Paul C. Boutros
Software Mentions: 12
Published: over 5 years ago

10.3389/fmicb.2019.00697

Taxonomic and Functional Characterization of the Microbial Community During Spontaneous in vitro Fermentation of Riesling Must
Cited by: 28
Author(s): Kimmo Sirén, Sarah S.T. Mak, Chrats Melkonian, Christian Carøe, Jan H. Swiegers, Douwe Molenaar, Ulrich Fischer, M. Thomas P. Gilbert
Software Mentions: 12
Published: about 5 years ago

10.1371/journal.pone.0191956

Carotenoid coloration and health status of urban Eurasian kestrels (Falco tinnunculus)
Cited by: 24
Author(s): Petra Sumasgutner, Marius Adrion, Anita Gamauf
Software Mentions: 12
Published: over 6 years ago

10.3389/fonc.2020.596822

Predictive Model and Precaution for Oral Mucositis During Chemo-Radiotherapy in Nasopharyngeal Carcinoma Patients
Cited by: 10
Author(s): Peijing Li, Kaixin Li, Tengchuan Jin, Hua Lin, Jun Fang, Shengchun Yang, Wei‐Chih Shen, Jia Chen, Jiang Zhang, Xiaozhong Chen, Ming Chen, Yuanyuan Chen
Software Mentions: 12
Published: over 3 years ago

10.1016/j.mex.2018.07.003

A practical method to control spatiotemporal confounding in environmental impact studies
Cited by: 4
Author(s): Rezvan Hatami
Software Mentions: 11
Published: over 6 years ago

10.1007/s11306-016-1090-x

Discovery of A-type procyanidin dimers in yellow raspberries by untargeted metabolomics and correlation based data analysis
Cited by: 6
Author(s): Elisabete Carvalho, Pietro Franceschi, Antje Feller, Lorena Herrera, L. Palmieri, Panagiotis Arapitsas, Samantha Riccadonna, Stefan Martens
Software Mentions: 11
Published: almost 8 years ago

10.1038/s41598-021-92406-6

Plasma lipidomic analysis shows a disease progression signature in mdx mice
Cited by: 3
Author(s): Roula Tsonaka, Alexandre Seyer, Annemieke Aartsma‐Rus, Pietro Spitali
Software Mentions: 11
Published: almost 3 years ago

10.1186/1476-069X-13-57

The identification of complex interactions in epidemiology and toxicology: a simulation study of boosted regression trees
Cited by: 45
Author(s): Erik Lampa, Lars Lind, P. Monica Lind, Anna Bornefalk-Hermansson
Software Mentions: 11
Published: almost 10 years ago

10.1371/journal.pone.0234503

Nest boxes buffer the effects of climate on breeding performance in an African urban raptor
Cited by: 17
Author(s): Petra Sumasgutner, Andrew R. Jenkins, Arjun Amar, Res Altwegg
Software Mentions: 11
Published: almost 4 years ago

10.1371/journal.pcbi.1006207

Network supporting contextual fear learning after dorsal hippocampal damage has increased dependence on retrosplenial cortex
Cited by: 18
Author(s): Cesar A.O. Coelho, Tatiana Lima Ferreira, Juliana Carlota Kramer Soares, João Ricardo Sato, Maria Gabriela Menezes Oliveira
Software Mentions: 11
Published: almost 6 years ago

10.1186/s40246-019-0230-6

Identification and potential mechanisms of a 4-lncRNA signature that predicts prognosis in patients with laryngeal cancer
Cited by: 50
Author(s): Guihai Zhang, Erxi Fan, Qiu‐Yue Zhong, Guangyong Feng, Shuai Yu, Mingna Wu, Qiying Chen, Xiaoxia Gou
Software Mentions: 11
Published: almost 5 years ago

10.3389/fonc.2021.614052

MRI Radiomics Signature as a Potential Biomarker for Predicting KRAS Status in Locally Advanced Rectal Cancer Patients
Cited by: 9
Author(s): Zhiyuan Zhang, Lijun Shen, Yan Wang, Jiazhou Wang, Hui Zhang, Xuesen Fan, Juefeng Wan
Software Mentions: 11
Published: about 3 years ago

10.3389/fmicb.2018.02301

Aquatic Bacterial Communities Associated With Land Use and Environmental Factors in Agricultural Landscapes Using a Metabarcoding Approach
Cited by: 38
Author(s): Wen Chen, Graham Wilkes, Izhar U. H. Khan, Katarina Pintar, Joseph P. Thomas, C. André Lévesque, Julie T. Chapados, Edward Topp, David R. Lapen
Software Mentions: 11
Published: over 5 years ago

10.1186/1471-2164-9-419

Transcriptomic responses to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) in liver: Comparison of rat and mouse
Cited by: 74
Author(s): Paul C. Boutros, Rui Yan, Ivy D. Moffat, Raimo Pohjanvirta, Allan B. Okey
Software Mentions: 11
Published: over 16 years ago

10.1038/s41598-020-72047-x

Light intensity regulates flower visitation in Neotropical nocturnal bees
Cited by: 11
Author(s): Rodolfo Liporoni, Guaraci Duran Cordeiro, Paulo Inácio Prado, Clemens Schlindwein, Eric J. Warrant, Isabel Alves‐dos‐Santos
Software Mentions: 10
Published: over 3 years ago

10.1186/s12859-016-0997-6

Unaccounted uncertainty from qPCR efficiency estimates entails uncontrolled false positive rates
Cited by: 5
Author(s): Anders Ellern Bilgrau, Steffen Falgreen, Anders Petersen, Malene Krag Kjeldsen, Julie Støve Bødker, Hans Erik Johnsen, Karen Dybkær, Martin Bøgsted
Software Mentions: 10
Published: about 8 years ago

10.1371/journal.pone.0114749

FindFoci: A Focus Detection Algorithm with Automated Parameter Training That Closely Matches Human Assignments, Reduces Human Inconsistencies and Increases Speed of Analysis
Cited by: 88
Author(s): Alex Herbert, Antony Carr, Eva R. Hoffmann
Software Mentions: 10
Published: over 9 years ago

10.1186/1472-6785-10-12

The world's richest tadpole communities show functional redundancy and low functional diversity: ecological data on Madagascar's stream-dwelling amphibian larvae
Cited by: 54
Author(s): Axel Strauß, Erik Reeve, Roger-Daniel Randrianiaina, Miguel Vences, Julian Glos
Software Mentions: 10
Published: over 14 years ago

10.1042/BSR20201734

Identification prognosis-associated immune genes in colon adenocarcinoma
Cited by: 16
Author(s): Yifei Miao, Jiangtao Wang, Xueping Ma, Yuan Yang, Denghai Mi
Software Mentions: 10
Published: over 3 years ago

10.3389/fcell.2021.649265

Multi-Omics Analysis of Anlotinib in Pancreatic Cancer and Development of an Anlotinib-Related Prognostic Signature
Cited by: 4
Author(s): Xi Zhang, Yang Liu, Zhen Zhang, Juan Tan, Junjun Zhang, Hao Ou, Jie Li, Zewen Song
Software Mentions: 10
Published: about 3 years ago

10.1089/vbz.2015.1822

Mapping Physiological Suitability Limits for Malaria in Africa Under Climate Change
Cited by: 113
Author(s): Sadie J. Ryan, Amy McNally, Leah R. Johnson, Erin A. Mordecai, Tal Ben‐Horin, Krijn P. Paaijmans, Kevin D. Lafferty
Software Mentions: 10
Published: over 8 years ago

10.1371/journal.pone.0191206

Prognostic relevance of elevated pulmonary arterial pressure assessed non-invasively: Analysis in a large patient cohort with invasive measurements in near temporal proximity
Cited by: 3
Author(s): Steffen Greiner, Andreas Jud, Matthias Aurich, Christoph Geisenberger, Lorenz Uhlmann, Thomas Hilbel, Meinhard Kieser, Hugo A. Katus, Derliz Mereles
Software Mentions: 10
Published: over 6 years ago

10.1186/s12967-020-02353-5

Nomograms to predict 2-year overall survival and advanced schistosomiasis-specific survival after discharge: a competing risk analysis
Cited by: 7
Author(s): Guo Li, Lifei Lian, Shanshan Huang, Jinfeng Miao, Huấn Cao, Chengchao Zuo, Xiaoyan Liu, Zhou Zhu
Software Mentions: 10
Published: about 4 years ago

10.1186/s40360-021-00505-x

Causal inference multiple imputation investigation of the impact of cannabinoids and other substances on ethnic differentials in US testicular cancer incidence
Cited by: 26
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 10
Published: almost 3 years ago

10.1038/s41598-021-94329-8

Combined detection of peripheral blood VEGF and inflammation biomarkers to evaluate the clinical response and prognostic prediction of non-operative ESCC
Cited by: 4
Author(s): Yuanyuan Ma, Xinyu Su, Xin Li, Xiaohui Zhi, Kan Jiang, Jianhong Xia, Hongliang Li, Yan Chen, Lixin Zhou
Software Mentions: 10
Published: almost 3 years ago

10.18632/aging.104014

Identification of a nomogram based on an 8-lncRNA signature as a novel diagnostic biomarker for head and neck squamous cell carcinoma
Cited by: 10
Author(s): Rui Mao, Yuanyuan Chen, Lei Xiong, Yanjun Liu, Tongtong Zhang
Software Mentions: 10
Published: over 3 years ago

10.1186/s13059-021-02484-y

Revisiting genetic artifacts on DNA methylation microarrays exposes novel biological implications
Cited by: 5
Author(s): Benjamin Planterose Jiménez, Manfred Kayser, Athina Vidaki
Software Mentions: 10
Published: over 2 years ago

10.1371/journal.pgen.1003209

Centromere-Like Regions in the Budding Yeast Genome
Cited by: 36
Author(s): Philippe Lefrançois, Raymond K. Auerbach, Christopher M. Yellman, G. Shirleen Roeder, M Snyder
Software Mentions: 10
Published: over 11 years ago

10.1038/s41598-020-65087-w

Expression of genes of the Pho regulon is altered in Streptomyces coelicolor
Cited by: 22
Author(s): Aarón Millán-Oropeza, Céline Henry, Clara Lejeune, Michelle David, Marie‐Joëlle Virolle
Software Mentions: 9
Published: almost 4 years ago

10.1038/s41598-020-72018-2

Spatial structure, parameter nonlinearity, and intelligent algorithms in constructing pedotransfer functions from large-scale soil legacy data
Cited by: 6
Author(s): Poulamee Chakraborty, Bhabani S. Das, Hitesh B. Vasava, Niranjan Panigrahi, Priyabrata Santra
Software Mentions: 9
Published: over 3 years ago

10.3390/microorganisms8020145

Detection of Specific Antibodies against Toscana Virus among Blood Donors in Northeastern Italy and Correlation with Sand Fly Abundance in 2014
Cited by: 4
Author(s): Silvia Morini, Mattia Calzolari, Giada Rossini, Nadia Pascarelli, Andrea Porcellini, Vanda Randi, Maria Carla Re, Alessandro Albieri, Paolo Bonilauri, Romeo Bellini, Nazlı Ayhan, Rémi N. Charrel, Stefania Varani
Software Mentions: 9
Published: over 4 years ago

10.1371/journal.pone.0122002

NOX1 Supports the Metabolic Remodeling of HepG2 Cells
Cited by: 15
Author(s): Katharina Bertram, Cristina-Maria Vâlcu, Michael Weitnauer, Uwe Linne, Agnes Görlach
Software Mentions: 9
Published: about 9 years ago

10.1186/s12885-020-6638-5

Multiple m6A RNA methylation modulators promote the malignant progression of hepatocellular carcinoma and affect its clinical prognosis
Cited by: 33
Author(s): Nanfang Qu, Sanyu Qin, Xuemei Zhang, Xiaotong Bo, Zhengchun Liu, Chao Tan, Guiqiong Wen, Haixing Jiang
Software Mentions: 9
Published: about 4 years ago

10.3390/ijerph17134698

Spatio-Temporal Dynamic of Malaria Incidence: A Comparison of Two Ecological Zones in Mali
Cited by: 7
Author(s): François Freddy Ateba, Issaka Sagara, Nafomon Sogoba, Mahamoudou Touré, Drissa Konaté, Sory Ibrahim Diawara, Seidina A. S. Diakité, Ayouba Diarra, Massa Coulibaly, Mathias Dolo, Amagana Dolo, Adama Sacko, Sidibé M’Baye Thiam, Aliou Sissako, Lansana Sangaré, Mahamadou Diakité, Ousmane Koïta, Mady Cissoko, Sékou F. Traorè, Peter J. Winch, Manuel Febrero–Bande, Jeffrey G. Shaffer, Donald J. Krogtad, Hannah C. Marker, Jean Gaudart
Software Mentions: 9
Published: almost 4 years ago

10.1186/1471-2407-14-130

Systematic analysis of 18F-FDG PET and metabolism, proliferation and hypoxia markers for classification of head and neck tumors
Cited by: 21
Author(s): Bianca A.W. Hoeben, Maud H.W. Starmans, Ralph T.H. Leijenaar, Ludwig Dubois, Albert J. van der Kogel, J.H.A.M. Kaanders, Paul C. Boutros, Johan Bussink
Software Mentions: 9
Published: about 10 years ago

10.1371/journal.pone.0129213

Association between Influenza A Virus Infection and Pigs Subpopulations in Endemically Infected Breeding Herds
Cited by: 35
Author(s): Andrés Díaz, Andrés Pérez, Srinand Sreevatsan, Peter Davies, Marie Culhane, Montserrat Torremorell
Software Mentions: 9
Published: almost 9 years ago

10.1371/journal.pone.0018337

mRNA Levels in Control Rat Liver Display Strain-Specific, Hereditary, and AHR-Dependent Components
Cited by: 7
Author(s): Paul C. Boutros, Ivy D. Moffat, Allan B. Okey, Raimo Pohjanvirta
Software Mentions: 9
Published: almost 13 years ago

10.18632/aging.103204

Comparison of prognostic prediction models for rectal gastrointestinal stromal tumor
Cited by: 2
Author(s): Jiaxin Liu, Pei‐Yun Zhou, Zheng Tang, Wei Yuan, Shen Shanshan, Ren Lang, Xing Zhengwen, Yong Fang, Xiaodong Gao, Anwei Xue, Kuntang Shen, Yayi Hou
Software Mentions: 9
Published: almost 4 years ago

10.7554/eLife.28811

Sperm competition risk drives rapid ejaculate adjustments mediated by seminal fluid
Cited by: 32
Author(s): Michael Bartlett, Tammy E. Steeves, Neil J. Gemmell, Patrice Rosengrave
Software Mentions: 9
Published: over 6 years ago

10.1038/s41598-021-96362-z

High efficacy of microbial larvicides for malaria vectors control in the city of Yaounde Cameroon following a cluster randomized trial
Cited by: 8
Author(s): Christophe Antonio-Nkondjio, Patricia Doumbe-Belisse, Landre Djamouko-Djonkam, Carmène Sandra Ngadjeu, Abdou Talipouo, Edmond Kopya, Roland Bamou, Marie Paul Audrey Mayi, Nadège Sonhafouo-Chiana, Diane Leslie Nkahe, Raymond Tabue, Dorothy A. Fosah, Jude D. Bigoga, Parfait Awono-Ambene, Charles S. Wondji
Software Mentions: 9
Published: over 2 years ago

10.1371/journal.pcbi.1008126

Ten simple rules to power drug discovery with data science
Cited by: 10
Author(s): Enrico Ferrero, Sophie Brachat, Jeremy L. Jenkins, Philippe Marc, Peter Skewes-Cox, Robert C. Altshuler, Caroline Gubser Keller, Audrey Kauffmann, Erik K Sassaman, Jason M. Laramie, Birgit Schoeberl, Mark Borowsky, Nikolaus Stiefl
Software Mentions: 9
Published: over 3 years ago

10.1186/1471-2164-15-139

Unique features of the transcriptional response to model aneuploidy in human cells
Cited by: 85
Author(s): Milena Dürrbaum, Anastasia Yurievna Kuznetsova, Verena Passerini, Silvia Stingele, Gabriele Stoehr, Zuzana Storchová
Software Mentions: 9
Published: over 10 years ago

10.1038/s41598-021-94996-7

Avian vampire fly (Philornis downsi) mortality differs across Darwin’s finch host species
Cited by: 3
Author(s): Lauren K. Common, Petra Sumasgutner, Rachael Y. Dudaniec, Diane Colombelli‐Négrel, Sonia Kleindorfer
Software Mentions: 9
Published: almost 3 years ago

10.7717/peerj.7155

Nature representation in South American protected areas: country contrasts and conservation priorities
Cited by: 16
Author(s): Germán Baldi, Santiago A. Schauman, Marcos Texeira, Sofía Marinaro, Osvaldo A. Martin, Patricia Gandini, Estéban G. Jobbágy
Software Mentions: 9
Published: almost 5 years ago

10.3389/fpsyg.2018.02327

Use or Consequences: Probing the Cognitive Difference Between Two Measures of Divergent Thinking
Cited by: 44
Author(s): Richard W. Hass, Roger E. Beaty
Software Mentions: 9
Published: over 5 years ago

10.3389/fgene.2020.570325

Construction of a Nomogram Based on a Hypoxia-Related lncRNA Signature to Improve the Prediction of Gastric Cancer Prognosis
Cited by: 29
Author(s): Qian Chen, Lang Hu, Kaihua Chen
Software Mentions: 9
Published: over 3 years ago

10.5811/westjem.2016.5.29957

Emergency Department Length of Stay for Maori and European Patients in New Zealand
Cited by: 6
Author(s): D Prisk, Godfrey Aj, Amy E. Lawrence
Software Mentions: 9
Published: almost 8 years ago

10.18632/aging.102513

Daily decrease of post-operative alpha-fetoprotein by 9% discriminates prognosis of HCC: A multicenter retrospective study
Cited by: 6
Author(s): Pei‐Yun Zhou, Chao‐Ping Yang, Zheng Tang, Yong Yi, Wei‐Ren Liu, Min Tian, Huang Ji, Wei Gan, Xi‐Fei Jiang, Liu Gao, Han Wang, Chenyang Tao, Yuan Fang, Wei‐Feng Qu, Cheng Zhou, Ruijuan Guan, Bao-Ye Sun, Yu‐Fu Zhou, Shushu Song, Zhen‐Bin Ding, Yuan‐Fei Peng, Zhi Dai, Jian Zhou, Jia Fan, Guozhong Gong, Ying‐Hong Shi, Shuang–Jian Qiu
Software Mentions: 8
Published: over 4 years ago

10.1038/s41598-017-15742-6

Emergence of tick-borne diseases at northern latitudes in Europe: a comparative approach
Cited by: 43
Author(s): Atle Mysterud, Solveig Jore, Olav Østerås, Hildegunn Viljugrein
Software Mentions: 8
Published: over 6 years ago

10.3389/fnins.2020.00687

Sustained Improvement of Negative Self-Schema After a Single Ketamine Infusion: An Open-Label Study
Cited by: 9
Author(s): Gregor Hasler, Samir Suker, Georgios Schoretsanitis, Yoan Mihov
Software Mentions: 8
Published: almost 4 years ago

10.1038/s41598-019-43716-3

Long-term field comparison of multiple low-cost particulate matter sensors in an outdoor urban environment
Cited by: 146
Author(s): Florentin M. J. Bulot, Steven J. Johnston, Philip J. Basford, Natasha H. C. Easton, Mihaela Apetroaie-Cristea, Gavin L. Foster, Andrew Morris, Simon J. Cox, Matthew Loxham
Software Mentions: 8
Published: about 5 years ago

10.7554/eLife.62709

A multifaceted analysis reveals two distinct phases of chloroplast biogenesis during de-etiolation in Arabidopsis
Cited by: 36
Author(s): Rosa Pipitone, Simona Eicke, Barbara Pfister, Gaétan Glauser, Denis Falconet, Clarisse Uwizeye, Thibaut Pralon, Samuel C. Zeeman, Félix Kessler, Emilie Demarsy
Software Mentions: 8
Published: about 3 years ago

10.1186/gm385

Exploiting the noise: improving biomarkers with ensembles of data analysis methodologies
Cited by: 14
Author(s): Maud H.W. Starmans, Melania Pintilie, Thomas John, Sandy D. Der, Frances A. Shepherd, Igor Jurišica, Philippe Lambin, Ming‐Sound Tsao, Paul C. Boutros
Software Mentions: 8
Published: over 12 years ago

10.1128/AEM.02601-17

Assessing Performance of Spore Samplers in Monitoring Aeromycobiota and Fungal Plant Pathogen Diversity in Canada
Cited by: 23
Author(s): Wen Chen, Sarah Hambleton, Keith A. Seifert, Odile Carisse, Moussa S. Diarra, R. D. Peters, Christine Lowe, Julie T. Chapados, C. André Lévesque
Software Mentions: 8
Published: about 6 years ago

10.7150/ijms.47073

A Novel Nomogram Predicting Distant Metastasis in T1 and T2 Gallbladder Cancer: A SEER-based Study
Cited by: 10
Author(s): Yulong Cai, Yixin Lin, Lingjun Jiang, Hui Ye, Fuyu Li, Nan‐Sheng Cheng
Software Mentions: 8
Published: over 4 years ago

10.1186/1471-2105-11-450

Filtering, FDR and power
Cited by: 43
Author(s): Maarten van Iterson, Judith M. Boer, Renée X. de Menezes
Software Mentions: 8
Published: over 13 years ago

10.1186/s12958-015-0130-0

Dorsal and medial raphe nuclei participate differentially in reproductive functions of the male rat
Cited by: 4
Author(s): Marı́a Elena Ayala, Diana E. Velázquez, Juan L. Mendoza, Juana Monroy, Roberto Domı́nguez, Mario Cárdenas, Andrés Martínez
Software Mentions: 8
Published: over 8 years ago

10.1186/1471-2164-13-556

Proteome remodelling during development from blood to insect-form Trypanosoma brucei quantified by SILAC and mass spectrometry
Cited by: 117
Author(s): Kapila Gunasekera, Daniel Wüthrich, Sophie Braga-Lagache, Manfred Heller, Torsten Ochsenreiter
Software Mentions: 8
Published: over 11 years ago

10.1186/s12859-016-1051-4

gtrellis: an R/Bioconductor package for making genome-level Trellis graphics
Cited by: 17
Author(s): Zuguang Gu, Roland Eils, Matthias Schlesner
Software Mentions: 8
Published: about 8 years ago

10.1186/s13071-018-3280-z

Probability of dengue transmission and propagation in a non-endemic temperate area: conceptual model and decision risk levels for early alert, prevention and control
Cited by: 13
Author(s): Cecilia Marques-Toledo, Maria Mercedes de Almeida Bendati, Cláudia Torres Codeço, Mauro Martins Teixeira
Software Mentions: 8
Published: over 5 years ago

10.3390/nu9010015

Effect of Human Milk Appetite Hormones, Macronutrients, and Infant Characteristics on Gastric Emptying and Breastfeeding Patterns of Term Fully Breastfed Infants
Cited by: 36
Author(s): Zoya Gridneva, Sambavi Kugananthan, Anna R. Hepworth, Wan Jun Tie, Ching Tat Lai, Leigh C. Ward, Peter Hartmann, Donna T. Geddes
Software Mentions: 8
Published: over 7 years ago

10.1038/s41598-020-75723-0

Veteran trees are a source of natural enemies
Cited by: 9
Author(s): Ross Wetherbee, Tone Birkemoe, Anne Sverdrup‐Thygeson
Software Mentions: 7
Published: over 3 years ago

10.1186/s13075-016-1120-0

A discrete cluster of urinary biomarkers discriminates between active systemic lupus erythematosus patients with and without glomerulonephritis
Cited by: 25
Author(s): Carolina Landolt-Marticorena, Stephenie D. Prokopec, Stacey Morrison, Babak Noamani, Dennisse Bonilla, Heather N. Reich, James W. Scholey, Carmen Ávila-Casado, Paul R. Fortin, Paul C. Boutros, Joan E. Wither
Software Mentions: 7
Published: over 7 years ago

10.1002/ece3.5622

Consequences of marine barriers for genetic diversity of the coral‐specialist yellowbar angelfish from the Northwestern Indian Ocean
Cited by: 17
Author(s): Felipe Torquato, Pedro Range, Radhouane Ben‐Hamadou, Eva Egelyng Sigsgaard, Philip Francis Thomsen, Rodrigo Riera, Michael L. Berumen, John A. Burt, David A. Feary, Alyssa Marshell, Daniele D’Agostino, Joseph D. DiBattista, Peter Rask Møller
Software Mentions: 7
Published: over 4 years ago

10.3389/fonc.2020.01591

An Ultrasound Radiomics Nomogram for Preoperative Prediction of Central Neck Lymph Node Metastasis in Papillary Thyroid Carcinoma
Cited by: 38
Author(s): Shichong Zhou, Tong‐Tong Liu, Jin Zhou, Yao Qi Huang, Yi Guo, Jinhua Yu, Yuan‐Yuan Wang, Cai Chang
Software Mentions: 7
Published: over 3 years ago

10.1002/cam4.343

The transcriptomic profile of ovarian cancer grading
Cited by: 2
Author(s): Cindy Q. Yao, Francis Nguyen, Syed Haider, Maud H.W. Starmans, Philippe Lambin, Paul C. Boutros
Software Mentions: 7
Published: over 9 years ago

10.1371/journal.pone.0196117

Identification of a neutrophil-related gene expression signature that is enriched in adult systemic lupus erythematosus patients with active nephritis: Clinical/pathologic associations and etiologic mechanisms
Cited by: 37
Author(s): Joan E. Wither, Stephenie D. Prokopec, Babak Noamani, Nan-Hua Chang, Dennisse Bonilla, Zahi Touma, Carmen Ávila-Casado, Heather N. Reich, James W. Scholey, Paul R. Fortin, Paul C. Boutros, Carolina Landolt-Marticorena
Software Mentions: 7
Published: about 6 years ago

10.1186/s12859-019-2610-2

BPG: Seamless, automated and interactive visualization of scientific data
Cited by: 55
Author(s): Christine P’ng, Jeffrey Green, Lauren C. Chong, Daryl Waggott, Stephenie D. Prokopec, Mehrdad Shamsi, Francis Nguyen, Davina Mak, Felix Lam, Marco A. Albuquerque, Yaoguo Wu, Esther Jung, Maud H.W. Starmans, Michelle Chan-Seng-Yue, Cindy Q. Yao, Bianca Liang, Emilie Lalonde, Syed Haider, Nicole A. Simone, Dorota H. Sendorek, Kenneth C. Chu, Nathalie C. Moon, Natalie S. Fox, Michal R. Grzadkowski, Nicholas J. Harding, Clement Fung, Amanda R. Murdoch, Kathleen E. Houlahan, Jianxin Wang, David R. Garcia, Richard de Borja, Ren Sun, Xihui Lin, Gregory M. Chen, Aileen Lu, Yu-Jia Shiah, Amin Zia, Ryan Kearns, Paul C. Boutros
Software Mentions: 7
Published: over 5 years ago

Projects: cran: lattice

Papers Mentioning lattice 251