An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12864-016-3387-6
https://doi.org/10.1186/s12864-016-3387-6
HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking
Cited by: 64
Author(s): Charalampos Lazaris, Stephen M. Kelly, Panagiotis Ntziachristos, Iannis Aifantis, Aristotelis Tsirigos
Published: almost 8 years ago
Software Mentions
28
A collection of pre-processing functions
Papers that mentioned: 146
Bootstrap Functions (Originally by Angelo Canty for S)
Papers that mentioned: 143
Visualization of a Correlation Matrix
Papers that mentioned: 1,077
Path Algorithm for the General Fused Lasso Signal Approximator
Papers that mentioned: 2
A Logging Utility for R
Papers that mentioned: 2
Collection of Tools for Genomic Data Analysis
Papers that mentioned: 5
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
Network Analysis and Visualization
Papers that mentioned: 1,555
Trellis Graphics for R
Papers that mentioned: 251
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
Sparse and Dense Matrix Classes and Methods
Papers that mentioned: 172
Command Line Option Parser
Papers that mentioned: 15
Package for Analysis of Space-Time Ecological Series
Papers that mentioned: 44
Various Plotting Functions
Papers that mentioned: 110
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
ColorBrewer Palettes
Papers that mentioned: 490
Flexibly Reshape Data
Papers that mentioned: 123
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
An Efficient and Deterministic Method for Identifying
Topological Domains in Genomes
Papers that mentioned: 31
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
S3 Infrastructure for Regular and Irregular Time Series (Z's
Ordered Observations)
Papers that mentioned: 45
VHDL simulator and synthesis tool
Papers that mentioned: 143
High performance graph data structures and algorithms
Papers that mentioned: 1,555
A framework for developing data models, including schema development and documentation.
Papers that mentioned: 251
UNKNOWN
Papers that mentioned: 468
The missing reshape for Python
Papers that mentioned: 123
Zoo is a rpc framework for Python
Papers that mentioned: 45