An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s12864-016-3387-6

https://doi.org/10.1186/s12864-016-3387-6

HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking

Cited by: 64
Author(s): Charalampos Lazaris, Stephen M. Kelly, Panagiotis Ntziachristos, Iannis Aifantis, Aristotelis Tsirigos
Published: over 8 years ago

Software Mentions 28

bioconductor: preprocessCore
A collection of pre-processing functions
Papers that mentioned: 146
Very Likely Science (100)
cran: boot
Bootstrap Functions (Originally by Angelo Canty for S)
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cran: corrplot
Visualization of a Correlation Matrix
Papers that mentioned: 1,077
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cran: flsa
Path Algorithm for the General Fused Lasso Signal Approximator
Papers that mentioned: 2
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cran: futile.logger
A Logging Utility for R
Papers that mentioned: 2
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cran: GenomicTools
Collection of Tools for Genomic Data Analysis
Papers that mentioned: 5
Very Likely Science (85)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
Very Likely Science (85)
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
Very Likely Science (100)
cran: lattice
Trellis Graphics for R
Papers that mentioned: 251
Very Likely Science (85)
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
Very Likely Science (100)
cran: Matrix
Sparse and Dense Matrix Classes and Methods
Papers that mentioned: 172
Very Likely Science (75)
cran: optparse
Command Line Option Parser
Papers that mentioned: 15
Very Likely Science (100)
cran: pastecs
Package for Analysis of Space-Time Ecological Series
Papers that mentioned: 44
Very Likely Science (85)
cran: plotrix
Various Plotting Functions
Papers that mentioned: 110
Very Likely Science (85)
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
Very Likely Science (100)
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
Very Likely Science (83)
cran: reshape
Flexibly Reshape Data
Papers that mentioned: 123
Very Likely Science (83)
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
Very Likely Science (95)
cran: TopDom
An Efficient and Deterministic Method for Identifying Topological Domains in Genomes
Papers that mentioned: 31
Very Likely Science (85)
cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
Very Likely Science (83)
cran: zoo
S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations)
Papers that mentioned: 45
Very Likely Science (75)
pypi: boot
VHDL simulator and synthesis tool
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pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
Very Likely Science (100)
pypi: lattice
A framework for developing data models, including schema development and documentation.
Papers that mentioned: 251
Very Likely Science (80)
pypi: plyr
UNKNOWN
Papers that mentioned: 468
Very Likely Science (65)
pypi: reshape
The missing reshape for Python
Papers that mentioned: 123
Very Likely Science (65)
pypi: zoo
Zoo is a rpc framework for Python
Papers that mentioned: 45
Very Likely Science (65)