cran: plotrix | Projects | Ecosyste.ms: Papers

10.3390/ijms22063251

Untargeted In Silico Compound Classification—A Novel Metabolomics Method to Assess the Chemodiversity in Bryophytes
Cited by: 11
Author(s): Kristian Peters, Gerd Ulrich Balcke, Niklas Kleinenkuhnen, Hendrik Treutler, Steffen Neumann
Software Mentions: 31
Published: over 3 years ago

10.1186/s12864-016-3387-6

HiC-bench: comprehensive and reproducible Hi-C data analysis designed for parameter exploration and benchmarking
Cited by: 64
Author(s): Charalampos Lazaris, Stephen M. Kelly, Panagiotis Ntziachristos, Iannis Aifantis, Aristotelis Tsirigos
Software Mentions: 28
Published: almost 8 years ago

10.1038/s41598-020-78469-x

Cerina: systematic circRNA functional annotation based on integrative analysis of ceRNA interactions
Cited by: 14
Author(s): Jacob Cardenas, Uthra Balaji, Jin Gu
Software Mentions: 23
Published: almost 4 years ago

10.7717/peerj.2836

Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene amplicons
Cited by: 273
Author(s): Ilias Lagkouvardos, Sandra E. Fischer, Neeraj Kumar, Thomas Clavel
Software Mentions: 20
Published: almost 8 years ago

10.1016/j.cell.2015.01.006

Enhancer Evolution across 20 Mammalian Species
Cited by: 626
Author(s): Diego Villar, Camille Berthelot, Sarah Aldridge, Tim Rayner, Margus Lukk, Miguel Pignatelli, Thomas J. Park, Robert Deaville, Jonathan Thor Erichsen, Anna J. Jasinska, James M. A. Turner, Mads F. Bertelsen, Elizabeth P. Murchison, Paul Flicek, Duncan T. Odom
Software Mentions: 17
Published: almost 10 years ago

10.3389/fvets.2020.00068

Near Real-Time Monitoring of Clinical Events Detected in Swine Herds in Northeastern Spain
Cited by: 3
Author(s): Ana Alba-Casals, Eduard Allue, Vicens Tarancón, Jordi Baliellas, Elena Novell, Sebastián Napp, Lorenzo Fraile
Software Mentions: 16
Published: almost 5 years ago

10.1007/s00204-021-03031-1

Functional alterations by a subgroup of neonicotinoid pesticides in human dopaminergic neurons
Cited by: 26
Author(s): Dominik Loser, María G. Hinojosa, John D. Blum, Jasmin Schaefer, Markus Brüll, Ylva Johansson, Ilinca Suciu, Karin Grillberger, Timm Danker, Clemens Möller, Iain Gardner, Gerhard Ecker, Susanne Hougaard Bennekou, Anna Forsby, Udo Kraushaar, Marcel Leist
Software Mentions: 15
Published: over 3 years ago

10.7717/peerj.4729

Effects of nettle slurry (Urtica dioica L.) used as foliar fertilizer on potato (Solanum tuberosum L.) yield and plant growth
Cited by: 9
Author(s): Alfonso Garmendia, María Dolores Raigón, Olmo Marques, M. Ferriol, Jorge Royo, Hugo Merlé
Software Mentions: 14
Published: over 6 years ago

10.1038/s41396-020-00798-6

Mucin-derived O-glycans supplemented to diet mitigate diverse microbiota perturbations
Cited by: 48
Author(s): Kali M. Pruss, Ángela Marcobal, Audrey Southwick, Dylan Dahan, Sam Smits, Jessica A. Ferreyra, Steven K. Higginbottom, Erica D. Sonnenburg, Purna C. Kashyap, Biswa Choudhury, Lars Bode, Justin L. Sonnenburg
Software Mentions: 14
Published: about 4 years ago

10.3390/ani10071151

Tenebrio molitor Larvae Meal Affects the Cecal Microbiota of Growing Pigs
Cited by: 8
Author(s): Sandra De Meyer, Denise K. Geßner, Garima Maheshwari, Julia Röhrig, Theresa Friedhoff, Erika Most, Holger Zorn, Robert Ringseis, Klaus Eder
Software Mentions: 14
Published: over 4 years ago

10.1007/s00204-020-02956-3

Human neuronal signaling and communication assays to assess functional neurotoxicity
Cited by: 13
Author(s): Dominik Loser, Jasmin Schaefer, Timm Danker, Clemens Möller, Markus Brüll, Ilinca Suciu, Anna‐Katharina Ückert, Stefanie Klima, Marcel Leist, Udo Kraushaar
Software Mentions: 14
Published: almost 4 years ago

10.1186/1471-2164-14-46

Systems infection biology: a compartmentalized immune network of pig spleen challenged with Haemophilus parasuis
Cited by: 9
Author(s): Ming Zhao, Xiangdong Liu, Xinyun Li, Hongbo Chen, Hui Jin, Rui Zhou, Mengjin Zhu, Shuhong Zhao
Software Mentions: 13
Published: almost 12 years ago

10.1016/j.xpro.2021.100837

Protocol for hybrid flux balance, statistical, and machine learning analysis of multi-omic data from the cyanobacterium Synechococcus sp. PCC 7002
Cited by: 3
Author(s): Supreeta Vijayakumar, Claudio Angione
Software Mentions: 13
Published: almost 3 years ago

10.18632/oncotarget.6716

Integrative bioinformatic analyses of an oncogenomic profile reveal the biology of endometrial cancer and guide drug discovery
Cited by: 5
Author(s): Henry Sung Ching Wong, Yung‐Shun Juan, Mei-Shin Wu, Yan Feng Zhang, Yi‐Hsiang Hsu, Huang-Hui Chen, Weimin Liu, Wei Chiao Chang
Software Mentions: 13
Published: almost 9 years ago

10.1002/ece3.5968

Contrasting responses to climate change at Himalayan treelines revealed by population demographics of two dominant species
Cited by: 23
Author(s): Kumar P. Mainali, Bharat Babu Shrestha, Ravi Kumar Sharma, Arjun Adhikari, Eliezer Gurarie, Michael C. Singer, Camille Parmesan
Software Mentions: 13
Published: almost 5 years ago

10.1371/journal.pone.0206563

Nitrogen addition pulse has minimal effect in big sagebrush (Artemisia tridentata) communities on the Pinedale Anticline, Wyoming (USA)
Cited by: 1
Author(s): Christopher W. Beltz, Megan L. Mobley, Ingrid C. Burke
Software Mentions: 13
Published: over 5 years ago

10.1371/journal.pone.0193437

Delineating modern variation from extinct morphology in the fossil record using shells of the Eastern Box Turtle (Terrapene carolina)
Cited by: 8
Author(s): Natasha Vitek
Software Mentions: 13
Published: over 6 years ago

10.4049/immunohorizons.1900097

Mass Cytometry Defines Virus-Specific CD4+ T Cells in Influenza Vaccination
Cited by: 3
Author(s): Priyanka B. Subrahmanyam, Tyson H. Holmes, Derek Lin, Laura F. Su, Gerlinde Obermoser, Jacques Banchereau, Virginia Pascual, Adolfo Garcı́a-Sastre, Randy A. Albrecht, Karolina Palucka, Mark M. Davis, Holden T. Maecker
Software Mentions: 13
Published: almost 4 years ago

10.3389/fpls.2021.651936

Unraveling the Relationship Between Seed Yield and Yield-Related Traits in a Diversity Panel of Brassica juncea Using Multi-Traits Mixed Model
Cited by: 13
Author(s): Ranjit Saroj, S. L. Soumya, S. P. Singh, Surya Sankar, Rajat Chaudhary, . Yashpal, Neeru Saini, Sujata Vasudev, Devendra K. Yadava
Software Mentions: 12
Published: over 3 years ago

10.1371/journal.pone.0184652

The evolution of Lachancea thermotolerans is driven by geographical determination, anthropisation and flux between different ecosystems
Cited by: 48
Author(s): Ana Hranilović, Marina Bely, Isabelle Masneuf‐Pomarède, Vladimir Jiranek, Warren Albertin
Software Mentions: 12
Published: about 7 years ago

10.1186/s12936-016-1124-x

Consistent prevalence of asymptomatic infections in malaria endemic populations in Colombia over time
Cited by: 21
Author(s): Juan M. Vásquez-Jiménez, Myriam Arévalo‐Herrera, Juliana Henao-Giraldo, Karen Molina-Gómez, María Isabel Arce-Plata, Andrés F. Vallejo, Sócrates Herrera
Software Mentions: 12
Published: almost 9 years ago

10.1371/journal.pntd.0007061

Population genetic structure and geographical variation in Neotricula aperta (Gastropoda: Pomatiopsidae), the snail intermediate host of Schistosoma mekongi (Digenea: Schistosomatidae)
Cited by: 2
Author(s): Stephen W. Attwood, Liang Liu, Guan-Nan Huo
Software Mentions: 12
Published: almost 6 years ago

10.1038/s41598-018-28356-3

Dosage compensation and DNA methylation landscape of the X chromosome in mouse liver
Cited by: 34
Author(s): Chris Duncan, Sara A. Grimm, Daniel L. Morgan, Pierre R. Bushel, Brian D. Bennett, John D. Roberts, Frederick L. Tyson, B. Alex Merrick, Paul A. Wade
Software Mentions: 11
Published: over 6 years ago

10.1186/1471-2105-7-509

CoXpress: differential co-expression in gene expression data
Cited by: 149
Author(s): Michael Watson
Software Mentions: 11
Published: about 18 years ago

10.1186/1756-0500-4-546

HumMeth27QCReport: an R package for quality control and primary analysis of Illumina Infinium methylation data
Cited by: 20
Author(s): Francesco Mancuso, Magda Montfort, Anna Carreras, Andreu Alibés, Guglielmo Roma
Software Mentions: 11
Published: almost 13 years ago

10.1371/journal.pone.0188079

Episodic future thinking reduces temporal discounting in healthy adolescents
Cited by: 35
Author(s): Uli Bromberg, Maria Lobatcheva, Jan Peters
Software Mentions: 11
Published: almost 7 years ago

10.1371/journal.pone.0249986

Openness Toward Organizational Change Scale (OTOCS): Validity evidence from Brazil and Portugal
Cited by: 4
Author(s): Jorge Sinval, Vernon D. Miller, João Marôco
Software Mentions: 11
Published: over 3 years ago

10.3390/insects10060177

Sticky Trap Design Considerations for Entrapping Bed Bugs
Cited by: 1
Author(s): Benjamin A. Hottel, Roberto M. Pereira, Salvador A. Gezan, Philip G. koehler
Software Mentions: 11
Published: over 5 years ago

10.1371/journal.pone.0224947

Does caching strategy vary with microclimate in endangered Mt. Graham red squirrels?
Cited by: 1
Author(s): Calebe P. Mendes, John L. Koprowski
Software Mentions: 10
Published: about 5 years ago

10.1186/s40168-018-0592-3

Citizen science charts two major “stomatotypes” in the oral microbiome of adolescents and reveals links with habits and drinking water composition
Cited by: 73
Author(s): Jesse R. Willis, Pedro González-Torres, Alexandros A. Pittis, Luis A. Bejarano, Luca Cozzuto, Núria Andreu, Miriam Alloza-Trabado, Antònia Valentín, Ewa Księżopolska, Harris Onywera, Magda Montfort, Antonio Hermoso, Susana Iraola-Guzmán, Ester Saus, Annick Labeeuw, Carlo Carolis, Jochen Hecht, Julia Ponomarenko, Toni Gabaldón
Software Mentions: 9
Published: almost 6 years ago

10.1038/s41598-017-14576-6

Sequencing genomes from mixed DNA samples - evaluating the metagenome skimming approach in lichenized fungi
Cited by: 37
Author(s): Meiser Anjuli, Jürgen Otte, Imke Schmitt, Francesco Dal Grande
Software Mentions: 9
Published: about 7 years ago

10.3389/fpls.2021.612843

Development and Validation of Methodology for Estimating Potato Canopy Structure for Field Crop Phenotyping and Improved Breeding
Cited by: 10
Author(s): Filipe Colwell, Jock Souter, Glenn Bryan, Lindsey Compton, Neil Boonham, Ankush Prashar
Software Mentions: 9
Published: almost 4 years ago

10.3389/fphys.2017.00354

Expression, Localization of SUMO-1, and Analyses of Potential SUMOylated Proteins in Bubalus bubalis Spermatozoa
Cited by: 4
Author(s): Rahim Dad Brohi, Li Wang, Najla Ben Hassine, Jiang Cao, Hira Sajjad Talpur, Di Wu, Chun–Jie Huang, Zia Ur Rehman, Dinesh Bhattarai, Li–Jun Huo
Software Mentions: 9
Published: over 7 years ago

10.3389/fpsyg.2020.550271

Development of the Referee Shared Mental Models Measure (RSMMM)
Cited by: 7
Author(s): Jorge Sinval, João Aragão e Pina, João Sinval, João Marôco, Catarina Marques Santos, Sjir Uitdewilligen, Marianne Maynard, Ana Passos
Software Mentions: 8
Published: about 4 years ago

10.1186/s12920-020-0729-7

ERα-related chromothripsis enhances concordant gene transcription on chromosome 17q11.1-q24.1 in luminal breast cancer
Cited by: 6
Author(s): Chun-Lin Lin, Xueying Tan, Chun-Liang Chen, Meena Kusi, Chia-Nung Hung, Chih-Wei Chou, Ya-Ting Hsu, Chiou‐Miin Wang, Nameer B. Kirma, Ching-Hung Lin, Kate Lathrop, Richard M. Elledge, Virginia Kaklamani, Kohzoh Mitsuya, Tim H.M. Huang
Software Mentions: 8
Published: over 4 years ago

10.1371/journal.pone.0133581

Spatial Scales of Genetic Structure in Free-Standing and Strangler Figs (Ficus, Moraceae) Inhabiting Neotropical Forests
Cited by: 12
Author(s): Katrin Heer, Elisabeth K. V. Kalko, Larissa Albrecht, Roosevelt García‐Villacorta, Felix C. Staeps, Edward Allen Herre, Christopher W. Dick
Software Mentions: 8
Published: over 9 years ago

10.3390/biology10010007

Effect of Weed Management on the Parasitoid Community in Mediterranean Vineyards
Cited by: 9
Author(s): Gabriella M Möller, Tamar Keasar, Idan Shapira, Daniella M Möller, Marco Ferrante, Michal Segoli
Software Mentions: 8
Published: almost 4 years ago

10.1002/ece3.4894

Contrasting patterns of divergence at the regulatory and sequence level in European Daphnia galeata natural populations
Cited by: 8
Author(s): Suda Parimala Ravindran, Maike Herrmann, Mathilde Cordellier
Software Mentions: 8
Published: almost 6 years ago

10.1371/journal.pone.0255849

Literary runaway: Increasingly more references cited per academic research article from 1980 to 2019
Cited by: 1
Author(s): Chaoyang Dai, Chen Quan, Tao Wan, Fan Liu, Ya‐Jun Gong, Qingfeng Wang
Software Mentions: 8
Published: over 3 years ago

10.3389/fpsyg.2019.00338

Transcultural Adaptation of the Oldenburg Burnout Inventory (OLBI) for Brazil and Portugal
Cited by: 35
Author(s): Jorge Sinval, Cristina Queirós, Sônia Regina Pasian, João Marôco
Software Mentions: 7
Published: over 5 years ago

10.1007/s10841-021-00327-6

Consistent oviposition preferences of the Duke of Burgundy butterfly over 14 years on a chalk grassland reserve in Bedfordshire, UK
Cited by: 0
Author(s): Matthew Hayes, Esme Ashe‐Jepson, GE Hitchcock, Richard Knock, Cbh Lucas, Andrew J. Bladon, Edgar C. Turner
Software Mentions: 7
Published: over 3 years ago

10.1111/eva.12724

Hybridization rate and hybrid fitness for Camelina microcarpa Andrz. ex DC (♀) and Camelina sativa (L.) Crantz(Brassicaceae) (♂)
Cited by: 19
Author(s): Sara L. Martin, Beatriz Lujan-Toro, Connie A. Sauder, Tracey James, Sara Ohadi, Linda M. Hall
Software Mentions: 7
Published: almost 6 years ago

10.3389/fmicb.2019.02359

Annual Protist Community Dynamics in a Freshwater Ecosystem Undergoing Contrasted Climatic Conditions: The Saint-Charles River (Canada)
Cited by: 21
Author(s): Perrine Cruaud, Adrien Vigneron, Marie‐Stéphanie Fradette, Caetano C. Dorea, Alexander I. Culley, Manuel J. Rodriguez, Steve J. Charette
Software Mentions: 7
Published: about 5 years ago

10.3390/microorganisms9071409

Distribution and Diversity of Beauveria in Boreal Forests of Northern European Russia
Cited by: 3
Author(s): И. А. Казарцев, Georgy R. Lednev
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.pone.0198664

Migrations and habitat use of the smooth hammerhead shark (Sphyrna zygaena) in the Atlantic Ocean
Cited by: 17
Author(s): Catarina C. Santos, Rui Coelho
Software Mentions: 6
Published: over 6 years ago

10.1186/s12862-017-1025-9

Epigenetic variation between urban and rural populations of Darwin’s finches
Cited by: 50
Author(s): Sabrina M. McNew, Daniel Beck, Ingrid Sadler‐Riggleman, Sarah A. Knutie, Jennifer A. H. Koop, Dale H. Clayton, Michael K. Skinner
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0089489

Evidence for an Epistatic Effect between TP53 R72P and MDM2 T309G SNPs in HIV Infection: A Cross-Sectional Study in Women from South Brazil
Cited by: 4
Author(s): Fernando Pires Hartwig, Ludmila Gonçalves Entiauspe, Emily Montosa Nunes, Fernanda Martins Rodrigues, Tiago Collares, Fabiana Kömmling Seixas, Mariângela Freitas da Silveira
Software Mentions: 6
Published: over 10 years ago

10.1371/journal.pone.0132932

Spatiotemporal Patterns of Tumor Occurrence in Children with Intraocular Retinoblastoma
Cited by: 13
Author(s): Benjamin King, Carlos Parra, Yimei Li, Kathleen J. Helton, Ibrahim Qaddoumi, Matthew W. Wilson, Robert J. Ogg
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.pcbi.1005351

ASPASIA: A toolkit for evaluating the effects of biological interventions on SBML model behaviour
Cited by: 3
Author(s): Stephanie Evans, Kieran Alden, Lourdes Cucurull‐Sanchez, Christopher Larminie, Mark Coles, Marika C. Kullberg, Jon Timmis
Software Mentions: 6
Published: almost 8 years ago

10.1371/journal.pone.0153200

Comparison of Methodologies to Detect Low Levels of Hemolysis in Serum for Accurate Assessment of Serum microRNAs
Cited by: 143
Author(s): Jaynish S. Shah, Patsy S. Soon, Deborah J. Marsh
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.ppat.1003450

Novel Immunomodulators from Hard Ticks Selectively Reprogramme Human Dendritic Cell Responses
Cited by: 64
Author(s): Stephen G. Preston, Juraj Majtán, Chrisoula Kouremenou, Oliwia Ryśnik, Lena Fatou Burger, Alejandro Cabezas-Cruz, Maylin Chiong Guzman, Miles A. Nunn, Guido C. Paesen, Patricia A. Nuttall, Jonathan M. Austyn
Software Mentions: 6
Published: over 11 years ago

10.1002/ece3.3142

Plant diversity has contrasting effects on herbivore and parasitoid abundance in Centaurea jacea flower heads
Cited by: 10
Author(s): Norma Nitschke, Eric Allan, H. Zwölfer, Lysett Wagner, Sylvia Creutzburg, Hannes Baur, Stefan Schmidt, Wolfgang W. Weisser
Software Mentions: 6
Published: about 7 years ago

10.3389/fmicb.2020.00925

Disentangling Large- and Small-Scale Abiotic and Biotic Factors Shaping Soil Microbial Communities in an Alpine Cushion Plant System
Cited by: 19
Author(s): Chenyue Wang, Richard Michalet, Ziyang Liu, Xingpei Jiang, Xiangtai Wang, Gaosen Zhang, Lu An, Shuyan Chen, Sa Xiao
Software Mentions: 5
Published: over 4 years ago

10.1038/s41598-017-10334-w

A functional approach to the structural complexity of coral assemblages based on colony morphological features
Cited by: 42
Author(s): Vianney Denis, Lauriane Ribas-Deulofeu, Nicolas Sturaro, Chao‐Yang Kuo, Chaolun Allen Chen
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.ppat.1009443

Bacteria primed by antimicrobial peptides develop tolerance and persist
Cited by: 33
Author(s): Alexandro Rodríguez‐Rojas, Desiree Y. Baeder, Paul R. Johnston, Roland R. Regoes, Jens Rolff
Software Mentions: 5
Published: over 3 years ago

10.1007/s00122-021-03828-9

Genome-wide association mapping of sodium and potassium concentration in rice grains and shoots under alternate wetting and drying and continuously flooded irrigation
Cited by: 6
Author(s): Caijin Chen, Anthony J. Travis, Mahmud Hossain, Rafiqul Islam, Adam H. Price, Gareth J. Norton
Software Mentions: 5
Published: over 3 years ago

10.1038/s41598-017-17623-4

Genomic diversity and macroecology of the crop wild relatives of domesticated pea
Cited by: 57
Author(s): Petr Smýkal, Iveta Hradilová, Oldřich Trněný, Jan Brus, Abhishek Rathore, Michael Bariotakis, Roma Rani Das, Debjyoti Bhattacharyya, Christopher M. Richards, Clarice J. Coyne, Stergios Pirintsos
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pone.0106381

Diagnostic Accuracy of Computer-Aided Detection of Pulmonary Tuberculosis in Chest Radiographs: A Validation Study from Sub-Saharan Africa
Cited by: 71
Author(s): Marianne Breuninger, Bram van Ginneken, Rick H. H. M. Philipsen, Francis Mhimbira, Jerry Hella, Fred Lwilla, Jan van den Hombergh, Amanda Ross, Levan Jugheli, Dirk Wagner, Klaus Reither
Software Mentions: 5
Published: about 10 years ago

10.1371/journal.pgen.1003460

Continent-Wide Decoupling of Y-Chromosomal Genetic Variation from Language and Geography in Native South Americans
Cited by: 91
Author(s): Lutz Roewer, Michael Nothnagel, Leonor Gusmão, Verónica Gomes, Miguel González, Daniel Corach, Andrea Sala, Evguenia Alechine, Teresinha de Jesus Brabo Ferreira Palha, Ney Pereira Carneiro dos Santos, Ândrea Ribeiro-dos-Santos, Martin Geppert, Sascha Willuweit, Marion Nagy, Sarah Zweynert, Miriam Baeta, Carolina Núñez, Begoña Martı́nez-Jarreta, Fabricio González-Andrade, E.F. Carvalho, Dayse A. Silva, J.J. Builes, Daniel Turbón, A.M. López-Parra, Eduardo Arroyo-Pardo, Ulises Toscanini, Lisbeth Borjas, Claudia Barletta-Carrillo, Elizabeth Ewart, Sidney Emanuel Batista dos Santos, Michael Krawczak
Software Mentions: 5
Published: over 11 years ago

10.3390/ijms21093229

A PIANO (Proper, Insufficient, Aberrant, and NO Reprogramming) Response to the Yamanaka Factors in the Initial Stages of Human iPSC Reprogramming
Cited by: 6
Author(s): Kejin Hu
Software Mentions: 5
Published: over 4 years ago

10.1002/ece3.4197

Impact of human disturbance on bee pollinator communities in savanna and agricultural sites in Burkina Faso, West Africa
Cited by: 24
Author(s): Katharina Stein, Kathrin Stenchly, Daouda Coulibaly, Alain Pauly, Kangbéni Dimobe, Ingolf Steffan‐Dewenter, Souleymane Konaté, Dethardt Goetze, Stefan Porembski, K. Eduard Linsenmair
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0179026

Ellenberg's indicator values support prediction of suitable habitat for pre-diapause larvae of endangered butterfly Euphydryas aurinia
Cited by: 10
Author(s): Remigiusz Pielech, Krzysztof Zając, Marcin Kadej, Marek Malicki, A. Malkiewicz, Dariusz Tarnawski
Software Mentions: 5
Published: over 7 years ago

10.1038/s41598-018-25015-5

Metabolic systems analysis of LPS induced endothelial dysfunction applied to sepsis patient stratification
Cited by: 22
Author(s): Sarah McGarrity, Ósk Anuforo, Haraldur Halldórsson, Andreas Bergmann, Skarphéđinn Halldórsson, Sirus Palsson, H Henriksen, Pär I. Johansson, Óttar Rolfsson
Software Mentions: 5
Published: over 6 years ago

10.1371/journal.pone.0023024

Temporal Retinal Nerve Fiber Loss in Patients with Spinocerebellar Ataxia Type 1
Cited by: 56
Author(s): Sarah Stricker, Timm Oberwahrenbrock, Hanna Zimmermann, Jan Schroeter, Matthias Endres, Alexander U. Brandt, Friedemann Paul
Software Mentions: 5
Published: over 13 years ago

10.1371/journal.pone.0238334

Genetic diversity of maize landraces from the South-West of France
Cited by: 7
Author(s): Yacine Diaw, Christine Tollon‐Cordet, Alain Charcosset, Stéphane Nicolas, Delphine Madur, Joëlle Ronfort, Jacques David, Brigitte Gouesnard
Software Mentions: 5
Published: almost 4 years ago

10.1371/journal.pntd.0004515

School Water, Sanitation, and Hygiene, Soil-Transmitted Helminths, and Schistosomes: National Mapping in Ethiopia
Cited by: 49
Author(s): Jack E. T. Grimes, Gemechu Tadesse, Kalkidan Mekete, Yonas Wuletaw, Abeba Gebretsadik, Michael French, Wendy Harrison, Lesley Drake, Iain Gardiner, Elodie Yard, Michael R. Templeton
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2105-13-294

Effects of protein interaction data integration, representation and reliability on the use of network properties for drug target prediction
Cited by: 25
Author(s): Antonio M. Mora, Ian Donaldson
Software Mentions: 4
Published: about 12 years ago

10.3389/fpsyg.2020.00010

Comparison of Trust Assessment Scales Based on Item Response Theory
Cited by: 7
Author(s): Buyun Dai, Wenqing Zhang, Yang Wang, Jian Xiao-Zhu
Software Mentions: 4
Published: almost 5 years ago

10.3389/fpubh.2015.00250

Seasonal Influenza Epidemics and El Niños
Cited by: 13
Author(s): Oluleke Oluwole
Software Mentions: 4
Published: about 9 years ago

10.1186/1471-2164-12-110

Strain-specific copy number variation in the intelectin locus on the 129 mouse chromosome 1
Cited by: 16
Author(s): Zen H. Lu, Alex di Domenico, Steven H. Wright, Pamela Knight, Bruce Whitelaw, Alan D. Pemberton
Software Mentions: 4
Published: almost 14 years ago

10.1186/s12711-020-00581-3

Genomic diversity and population structure of the Leonberger dog breed
Cited by: 8
Author(s): Anna Letko, Katie M. Minor, Vidhya Jagannathan, Franz R. Seefried, James R. Mickelson, P.A. Oliehoek, Cord Drögemüller
Software Mentions: 4
Published: about 4 years ago

10.1186/s13059-017-1273-4

Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize
Cited by: 131
Author(s): Rurika Oka, Johan Zicola, Blaise Weber, Sarah N. Anderson, Charlie Hodgman, Jonathan I. Gent, Jan Jaap Wesselink, Nathan M. Springer, Huub C. J. Hoefsloot, Franziska Turck, Maike Stam
Software Mentions: 4
Published: over 7 years ago

10.1186/s12863-015-0203-2

The genetic prehistory of domesticated cattle from their origin to the spread across Europe
Cited by: 95
Author(s): Amelie Scheu, Adam Powell, Ruth Bollongino, Jean‐Denis Vigne, Anne Tresset, Canan Çakırlar, Norbert Benecke, Joachim Bürger
Software Mentions: 4
Published: over 9 years ago

10.1038/s41598-020-74753-y

Alcohol use in severely injured trauma patients
Cited by: 20
Author(s): Antti Riuttanen, Saara Jäntti, Ville M. Mattila
Software Mentions: 4
Published: about 4 years ago

10.3390/ijerph17031111

Short-Term Associations of Fine Particulate Matter and Synoptic Weather Types with Cardiovascular Mortality: An Ecological Time-Series Study in Shanghai, China
Cited by: 11
Author(s): Tian Qing, Mei Li, Scott Montgomery, Bo Fang, Chunfang Wang, Tian Xia, Yang Cao
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0181769

Monitoring protected areas from space: A multi-temporal assessment using raptors as biodiversity surrogates
Cited by: 9
Author(s): Adrián Regos, Luis Tapia, Alberto Gil-Carrera, Jesús Domínguez
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pgen.1003766

An Atypical Kinase under Balancing Selection Confers Broad-Spectrum Disease Resistance in Arabidopsis
Cited by: 107
Author(s): Carine Huard-Chauveau, Laure Perchepied, Marilyne Debieu, Susana Rivas, Thomas Kroj, I. Kars, Joy Bergelson, Fabrice Roux, Dominique Roby
Software Mentions: 3
Published: about 11 years ago

10.1093/conphys/coz068

Only as strong as the weakest link: structural analysis of the combined effects of elevated temperature and pCO2 on mussel attachment
Cited by: 17
Author(s): Laura Newcomb, Matthew N. George, Michael J. O’Donnell, Emily Carrington
Software Mentions: 3
Published: almost 6 years ago

10.1038/s41598-019-47757-6

The Genomic Landscape of Centromeres in Cancers
Cited by: 17
Author(s): Anjan K. Saha, Mohamad Mourad, Mark H. Kaplan, Ilana Chefetz, Sami N. Malek, Ronald J. Buckanovich, David M. Markovitz, Rafael Contreras-Galindo
Software Mentions: 3
Published: over 5 years ago

10.3390/insects10110383

Ants Sense, and Follow, Trail Pheromones of Ant Community Members
Cited by: 8
Author(s): Jaime M. Chalissery, Asim Renyard, Regine Gries, Danielle Hoefele, Santosh Kumar Alamsetti
Software Mentions: 3
Published: about 5 years ago

10.3390/insects12020147

Ant Guild Identity Determines Seed Fate at the Post-Removal Seed Dispersal Stages of a Desert Perennial
Cited by: 5
Author(s): Gilad Ben-Zvi, Merav Seifan, Itamar Giladi
Software Mentions: 3
Published: almost 4 years ago

10.1002/ece3.3058

Semi‐supervised determination of pseudocryptic morphotypes using observer‐free characterizations of anatomical alignment and shape
Cited by: 19
Author(s): Natasha Vitek, Carly L. Manz, Tingran Gao, Jonathan I. Bloch, Suzanne G. Strait, Douglas Boyer
Software Mentions: 3
Published: over 7 years ago

10.1038/s41598-018-27800-8

Pan4Draft: A Computational Tool to Improve the Accuracy of Pan-Genomic Analysis Using Draft Genomes
Cited by: 9
Author(s): Adonney Allan de Oliveira Veras, Fabrício Almeida Araújo, Kenny da Costa Pinheiro, Luís Carlos Guimarães, Vasco Azevedo, Siomar C. Soares, Artur da Costa da Luiz Silva, Rommel Thiago Jucá Ramos
Software Mentions: 3
Published: over 6 years ago

10.1002/ece3.6729

A tale of two seasons: The link between seasonal migration and climatic niches in passerine birds
Cited by: 7
Author(s): Alison Eyres, Katrin Böhning‐Gaese, C. David L. Orme, Carsten Rahbek, Susanne A. Fritz
Software Mentions: 3
Published: about 4 years ago

10.1186/s12864-016-3195-z

Visualizing tumor evolution with the fishplot package for R
Cited by: 121
Author(s): Christopher A. Miller, Joshua F. McMichael, Ha X. Dang, Christopher A. Maher, Ding Li, Timothy J. Ley, Elaine R. Mardis, Richard K. Wilson
Software Mentions: 3
Published: about 8 years ago

10.1111/eva.12255

Habitat corridors facilitate genetic resilience irrespective of species dispersal abilities or population sizes
Cited by: 58
Author(s): Mark R. Christie, L. Lacey Knowles
Software Mentions: 3
Published: over 9 years ago

10.1098/rsos.192039

The mark of captivity: plastic responses in the ankle bone of a wild ungulate ( Sus scrofa )
Cited by: 28
Author(s): H. Harbers, Dimitri Neaux, Katia Ortiz, Barbara Blanc, Flavie Laurens, Isabelle Baly, Cécile Callou, Renate Schafberg, Ashleigh Haruda, François Lecompte, François Casabianca, Jacqueline Studer, Sabrina Renaud, Raphaël Cornette, Yann Locatelli, Jean‐Denis Vigne, Anthony Herrel, Thomas Cucchi
Software Mentions: 3
Published: over 4 years ago

10.3390/ijerph17114016

Temporal Evolution of PAHs Bioaccessibility in an Aged-Contaminated Soil during the Growth of Two Fabaceae
Cited by: 7
Author(s): Marie Davin, Elisa Renard, Kévin Lefébure, Marie‐Laure Fauconnier, Gilles Colinet
Software Mentions: 3
Published: over 4 years ago

10.1186/s12859-016-1404-z

ConEVA: a toolbox for comprehensive assessment of protein contacts
Cited by: 23
Author(s): Badri Adhikari, Jackson Nowotny, Debswapna Bhattacharya, Jie Hou, Jianlin Cheng
Software Mentions: 2
Published: almost 8 years ago

10.1089/ars.2017.7104

Inhibition of Diverse DsbA Enzymes in Multi-DsbA Encoding Pathogens
Cited by: 33
Author(s): Makrina Totsika, Dimitrios Vagenas, Jason J. Paxman, Geqing Wang, Rabeb Dhouib, Pooja Sharma, Jennifer L. Martin, M.J. Scanlon, Begoña Heras
Software Mentions: 2
Published: about 6 years ago

10.3390/jcm8101541

Heat Generation at the Implant–Bone Interface by Insertion of Ceramic and Titanium Implants
Cited by: 3
Author(s): Markus Schlee, Paul Weigl, Eugenie König, Alexandra Toderas, Ümniye Balaban, Christoph Ratka
Software Mentions: 2
Published: about 5 years ago

10.1002/ece3.1430

Ecological differentiation, lack of hybrids involving diploids, and asymmetric gene flow between polyploids in narrow contact zones ofSenecio carniolicus(syn.Jacobaea carniolica, Asteraceae)
Cited by: 42
Author(s): Karl Hülber, Michaela Sonnleitner, Jan Suda, Jana Krejčíková, Peter Schönswetter, Gerald M. Schneeweiss, Manuela Winkler
Software Mentions: 2
Published: over 9 years ago

10.1186/s12864-015-1792-x

The complete mitochondrial genome sequence of the green microalga Lobosphaera (Parietochloris) incisa reveals a new type of palindromic repetitive repeat
Cited by: 8
Author(s): Nicolas J. Tourasse, Nastassia Shtaida, Inna Khozin‐Goldberg, Sammy Boussiba, Olivier Vallon
Software Mentions: 2
Published: over 9 years ago

10.1371/journal.pone.0139269

Variability in Migration Routes Influences Early Marine Survival of Juvenile Salmon Smolts
Cited by: 24
Author(s): Nathan B. Furey, Stephen P. Vincent, Scott G. Hinch, David W. Welch
Software Mentions: 2
Published: about 9 years ago

10.1038/s41598-018-21608-2

Flexible migratory choices of Cory’s shearwaters are not driven by shifts in prevailing air currents
Cited by: 10
Author(s): Gaia Dell’Ariccia, Simon Benhamou, Maria P. Dias, José Pedro Granadeiro, Joël Sudre, Paulo Catry, Francesco Bonadonna
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pone.0138646

A Dietary Supplement Containing Cinnamon, Chromium and Carnosine Decreases Fasting Plasma Glucose and Increases Lean Mass in Overweight or Obese Pre-Diabetic Subjects: A Randomized, Placebo-Controlled Trial
Cited by: 44
Author(s): Yuejun Liu, Aurélie Cotillard, Camille Vatier, Jean‐Philippe Bastard, Soraya Fellahi, Marie Stévant, Omran Allatif, Clotilde Langlois, Séverine Bieuvelet, Amandine Brochot, A. Guilbot, Karine Clément, Salwa W. Rizkalla
Software Mentions: 2
Published: about 9 years ago

10.1371/journal.pone.0046202

Influence of the Male Ejaculate on Post-Mating Prezygotic Barriers in Field Crickets
Cited by: 22
Author(s): Erica L. Larson, José Á. Andrés, Richard G. Harrison
Software Mentions: 2
Published: about 12 years ago

10.1038/s41598-021-87999-x

Transcriptome analysis of upland cotton revealed novel pathways to scavenge reactive oxygen species (ROS) responding to Na2SO4 tolerance
Cited by: 5
Author(s): Qinqin Wang, Xuke Lu, Xiugui Chen, Waqar Afzal Malik, Delong Wang, Lingxia Zhao, Junjuan Wang, Shuai Wang, Lixue Guo, Ruifeng Cui, Mingge Han, Cun Rui, Yuexin Zhang, Yapeng Fan, Chao Chen, Wuwei Ye
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pone.0208138

On the use of local weather types classification to improve climate understanding: An application on the urban climate of Toulouse
Cited by: 26
Author(s): Julia Hidalgo, Renaud Jougla
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12917-019-2006-6

Metabolic derangements and reduced survival of bile-extracted Asiatic black bears (Ursus thibetanus)
Cited by: 9
Author(s): Monica Kaho Herkules Bando, O. Lynne Nelson, Clark Kogan, Rance K. Sellon, Michelle M. Wiest, Heather Bacon, Mandala Hunter-Ishikawa, Wendy Leadbeater, Koji Yamazaki, Yipeng Jin, Takeshi Komatsu, David McGeachy
Software Mentions: 2
Published: over 5 years ago

Projects: cran: plotrix

Papers Mentioning plotrix 110