Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-018-28356-3

https://doi.org/10.1038/s41598-018-28356-3

Dosage compensation and DNA methylation landscape of the X chromosome in mouse liver

Cited by: 34
Author(s): Chris Duncan, Sara A. Grimm, Daniel L. Morgan, Pierre R. Bushel, Brian D. Bennett, John D. Roberts, Frederick L. Tyson, B. Alex Merrick, Paul A. Wade
Published: over 6 years ago

Software Mentions 11

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: DSS
Dispersion shrinkage for sequencing data
Papers that mentioned: 288
bioconductor: genefilter
genefilter: methods for filtering genes from high-throughput experiments
Papers that mentioned: 142
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASS
Papers that mentioned: 2,353
cran: plotrix
Various Plotting Functions
Papers that mentioned: 110
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: ggplot
ggplot for python
Papers that mentioned: 796
pypi: graphics
A console based graphics engine for simple Unicode games and animations.
Papers that mentioned: 126
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105