pypi: graphics | Projects | Ecosyste.ms: Papers

10.1371/journal.pntd.0005121

Seasonal and Spatial Environmental Influence on Opisthorchis viverrini Intermediate Hosts, Abundance, and Distribution: Insights on Transmission Dynamics and Sustainable Control
Cited by: 20
Author(s): Christina Sunyoung Kim, Pierre Echaubard, Apiporn Suwannatrai, Sasithorn Kaewkes, Bruce A. Wilcox, Banchob Sripa
Software Mentions: 19
Published: about 8 years ago

10.1186/s12859-021-04261-x

Machine learning-based prediction of survival prognosis in cervical cancer
Cited by: 16
Author(s): Dongyan Ding, Tingyuan Lang, Dongling Zou, Jianrong Tan, Jia Chen, Lei Zhou, Dong Wang, Rong Li, Yunzhe Li, Jingshu Liu, Cui Ma, Qi Zhou
Software Mentions: 14
Published: over 3 years ago

10.1371/journal.pone.0237368

Patient propagules: Do soil archives preserve the legacy of fungal and prokaryotic communities?
Cited by: 9
Author(s): Gian Maria Niccolò Benucci, Bryan Rennick, Gregory Bonito
Software Mentions: 14
Published: over 4 years ago

10.1186/s12864-018-4559-3

ATACseqQC: a Bioconductor package for post-alignment quality assessment of ATAC-seq data
Cited by: 133
Author(s): Jianhong Ou, Haibo Li, Jun Yu, Michelle A. Kelliher, Lucio H. Castilla, Nathan D. Lawson, Lihua Julie Zhu
Software Mentions: 14
Published: over 6 years ago

10.3389/fvets.2019.00406

An Epidemiological and Economic Simulation Model to Evaluate Strategies for the Control of Bovine Virus Diarrhea in Germany
Cited by: 17
Author(s): Jörn Gethmann, Carolina Probst, Jason Bassett, Pascal Blunk, Philipp Hövel, Franz Josef Conraths
Software Mentions: 13
Published: about 5 years ago

10.1186/s13227-020-0147-0

Elongation during segmentation shows axial variability, low mitotic rates, and synchronized cell cycle domains in the crustacean, Thamnocephalus platyurus
Cited by: 9
Author(s): Savvas J. Constantinou, Nicole Duan, Lisa M. Nagy, Ariel D. Chipman, Terri A. Williams
Software Mentions: 13
Published: almost 5 years ago

10.1186/1471-2164-14-46

Systems infection biology: a compartmentalized immune network of pig spleen challenged with Haemophilus parasuis
Cited by: 9
Author(s): Ming Zhao, Xiangdong Liu, Xinyun Li, Hongbo Chen, Hui Jin, Rui Zhou, Mengjin Zhu, Shuhong Zhao
Software Mentions: 13
Published: almost 12 years ago

10.1186/s13071-017-2054-3

GIS-supported epidemiological analysis on canine Angiostrongylus vasorum and Crenosoma vulpis infections in Germany
Cited by: 41
Author(s): Pavlo Maksimov, Carlos Hermosilla, Anja Taubert, Christoph Staubach, Carola Sauter‐Louis, Franz Josef Conraths, Majda Globokar Vrhovec, Nikola Pantchev
Software Mentions: 12
Published: over 7 years ago

10.3389/fonc.2014.00147

An Integrative Analysis of Meningioma Tumors Reveals the Determinant Genes and Pathways of Malignant Transformation
Cited by: 7
Author(s): José Carlos Iglesias Gómez, Adrián Mosquera Orgueira
Software Mentions: 11
Published: over 10 years ago

10.3390/ijms19030742

Effect of Presence and Concentration of Plasticizers, Vegetable Oils, and Surfactants on the Properties of Sodium-Alginate-Based Edible Coatings
Cited by: 48
Author(s): Tugce Sentürk Parreidt, Michael Schott, Markus Schmid, Kajetan Müller
Software Mentions: 11
Published: over 6 years ago

10.1038/s41598-018-28356-3

Dosage compensation and DNA methylation landscape of the X chromosome in mouse liver
Cited by: 34
Author(s): Chris Duncan, Sara A. Grimm, Daniel L. Morgan, Pierre R. Bushel, Brian D. Bennett, John D. Roberts, Frederick L. Tyson, B. Alex Merrick, Paul A. Wade
Software Mentions: 11
Published: over 6 years ago

10.3389/fonc.2020.526577

Patient Stratification of Clear Cell Renal Cell Carcinoma Using the Global Transcription Factor Activity Landscape Derived From RNA-Seq Data
Cited by: 7
Author(s): Yanyan Zhu, Shundong Cang, Bowang Chen, Ye Gu, Miaomiao Jiang, Junya Yan, Fengmin Shao, Xiaoyun Huang
Software Mentions: 10
Published: almost 4 years ago

10.3390/jcm10112278

Updates on Children with Allergic Rhinitis and Asthma during the COVID-19 Outbreak
Cited by: 17
Author(s): Giulia Brindisi, Valentina De Vittori, Rosalba De Nola, Elia Pignataro, Caterina Anania, Giovanna De Castro, Bianca Cinicola, Alessandra Gori, Ettore Cicinelli, Anna Maria Zicari
Software Mentions: 10
Published: over 3 years ago

10.1186/s13059-018-1432-2

FOCS: a novel method for analyzing enhancer and gene activity patterns infers an extensive enhancer–promoter map
Cited by: 57
Author(s): Tom Aharon Hait, David Amar, Ron Shamir, Ran Elkon
Software Mentions: 10
Published: over 6 years ago

10.1534/g3.120.401174

Sirt4 Modulates Oxidative Metabolism and Sensitivity to Rapamycin Through Species-Dependent Phenotypes in Drosophila mtDNA Haplotypes
Cited by: 3
Author(s): Richard Sejour, Roger A. Sanguino, Monika Mikolajczak, Walishah Ahmadi, Eugenia Villa-Cuesta
Software Mentions: 10
Published: over 4 years ago

10.3390/ijms22179601

In Silico Methods for the Identification of Diagnostic and Favorable Prognostic Markers in Acute Myeloid Leukemia
Cited by: 7
Author(s): Hande Öngün Yılmaz, Halil Ibrahim Toy, Stephan Marquardt, Gökhan Karakülah, Can Küçük, Panagiota I. Kontou, Stella Logotheti, Athanasia Pavlopoulou
Software Mentions: 10
Published: about 3 years ago

10.3389/fcell.2021.649265

Multi-Omics Analysis of Anlotinib in Pancreatic Cancer and Development of an Anlotinib-Related Prognostic Signature
Cited by: 4
Author(s): Xi Zhang, Yang Liu, Zhen Zhang, Juan Tan, Junjun Zhang, Hao Ou, Jie Li, Zewen Song
Software Mentions: 10
Published: over 3 years ago

10.3390/ijms22031190

Genome-Wide DNA Methylation Analysis of a Cohort of 41 Patients Affected by Oculo-Auriculo-Vertebral Spectrum (OAVS)
Cited by: 12
Author(s): Valentina Guida, Luciano Calzari, Maria Teresa Fadda, Francesca Piceci‐Sparascio, María Cristina Digilio, Laura Bernardini, Francesco Brancati, Teresa Mattina, Daniela Melis, Francesca Forzano, Silvana Briuglia, Tommaso Mazza, Sebastiano Bianca, Enza Maria Valente, Leila Bagherjad Salehi, Paolo Prontera, Mario Pagnoni, Romano Tenconi, Bruno Dallapiccola, Giorgio Iannetti, Luigi Corsaro, Alessandro De Luca, Davide Gentilini
Software Mentions: 10
Published: almost 4 years ago

10.1111/eva.13296

Ageing European lobsters (Homarus gammarus) using DNA methylation of evolutionarily conserved ribosomal DNA
Cited by: 8
Author(s): Eleanor A. Fairfield, David S. Richardson, Carly L. Daniels, Christopher L. Butler, Ewen Bell, Martin I. Taylor
Software Mentions: 9
Published: about 3 years ago

10.3389/fnbeh.2019.00036

Prolonged Bat Call Exposure Induces a Broad Transcriptional Response in the Male Fall Armyworm (Spodoptera frugiperda; Lepidoptera: Noctuidae) Brain
Cited by: 13
Author(s): Scott D Cinel, Steven J. Taylor
Software Mentions: 9
Published: over 5 years ago

10.3390/ijms22073411

Insights of Phenolic Pathway in Fruits: Transcriptional and Metabolic Profiling in Apricot (Prunus armeniaca)
Cited by: 6
Author(s): Helena Gómez-Martínez, Francisco Gil-Muñoz, Almudena Bermejo, Elena Zuriaga, M. L. Badenes
Software Mentions: 9
Published: over 3 years ago

10.3390/ijms21145044

Epigenome Wide Association and Stochastic Epigenetic Mutation Analysis on Cord Blood of Preterm Birth
Cited by: 10
Author(s): Elena Spada, Luciano Calzari, Luigi Corsaro, Teresa Fazia, Monica Mencarelli, Anna Maria Di Blasio, Luisa Bernardinelli, G. Zangheri, Michele Vignali, Davide Gentilini
Software Mentions: 9
Published: over 4 years ago

10.1007/s11306-017-1284-x

Metabolomic analysis of tomato seed germination
Cited by: 31
Author(s): Rashid H. Kazmi, Leo A.J. Willems, Ronny V.L. Joosen, Naveed Ahmad Khan, Wilco Ligterink, Henk W. M. Hilhorst
Software Mentions: 8
Published: about 7 years ago

10.1002/1878-0261.12139

Transcription instability in high-risk neuroblastoma is associated with a global perturbation of chromatin domains
Cited by: 4
Author(s): Carlo Zanon, Gian Paolo Tonini
Software Mentions: 8
Published: about 7 years ago

10.1007/s10661-016-5710-8

Is the macrophyte diversification along the trophic gradient distinct enough for river monitoring?
Cited by: 14
Author(s): Krzysztof Szoszkiewicz, Anna Budka, Karol Pietruczuk, Dariusz Kayzer, Daniel Gebler
Software Mentions: 8
Published: almost 8 years ago

10.3389/fmicb.2017.02512

Worldwide Phylogenetic Group Patterns of Escherichia coli from Commensal Human and Wastewater Treatment Plant Isolates
Cited by: 69
Author(s): Nancy de Castro Stoppe, Juliana Saragiotto Silva, Camila Carlos, Maria Inês Z. Sato, Antônio Mauro Saraiva, Laura Maria Mariscal Ottoboni, Tatiana Teixeira Torres
Software Mentions: 8
Published: almost 7 years ago

10.1093/plankt/fbab017

Container volume may affect growth rates of ciliates and clearance rates of their microcrustacean predators in microcosm experiments
Cited by: 4
Author(s): Thomas Weisse, Dunja Lukić, Xiaoteng Lu
Software Mentions: 8
Published: over 3 years ago

10.1016/j.heliyon.2020.e03549

Trends in the occurrence of large Whooping Crane groups during migration in the great plains, USA
Cited by: 4
Author(s): Andrew J. Caven, Matt Rabbe, Jenna Malzahn, Anne E. Lacy
Software Mentions: 7
Published: over 4 years ago

10.7554/eLife.29312

Single-cell transcriptomics reveals a new dynamical function of transcription factors during embryonic hematopoiesis
Cited by: 35
Author(s): Isabelle Bergiers, Tallulah Andrews, Özge Vargel Bölükbaşı, Andreas Buneß, Ewa Janosz, Natalia López-Anguita, Kerstin Ganter, Kinga Kosim, Cemre Celen, Gülce Itır Perçin, Paul Collier, Bianka Baying, Vladimı́r Beneš, Martin Hemberg, Christophe Lancrin
Software Mentions: 7
Published: over 6 years ago

10.3389/fmicb.2021.703792

Exploring the Microdiversity Within Marine Bacterial Taxa: Toward an Integrated Biogeography in the Southern Ocean
Cited by: 5
Author(s): Guillaume Schwob, Nicolás I. Segovia, Claudio A. González‐Wevar, Léa Cabrol, Julieta Orlando, Élie Poulin
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0222749

Brettanomyces bruxellensis wine isolates show high geographical dispersal and long persistence in cellars
Cited by: 12
Author(s): Alice Cibrario, Marta Avramova, Maria Dimopoulou, Maura Magani, Cécile Miot-Sertier, Albert Mas, María del Carmen Portillo Guisado, Patricia Ballestra, Warren Albertin, Isabelle Masneuf‐Pomarède, Marguerite Dols‐Lafargue
Software Mentions: 7
Published: almost 5 years ago

10.1155/2020/8850199

Forecasting COVID-19 Cases Using Alpha-Sutte Indicator: A Comparison with Autoregressive Integrated Moving Average (ARIMA) Method
Cited by: 5
Author(s): A. M. C. H. Attanayake, S. S. N. Perera
Software Mentions: 7
Published: almost 4 years ago

10.1371/journal.pone.0048365

Molecular and Immunological Characterization of Gluten Proteins Isolated from Oat Cultivars That Differ in Toxicity for Celiac Disease
Cited by: 67
Author(s): Ana Real, Isabel Comino, Laura de Lorenzo, Francisco Merchán, Javier Gil-Humanes, María J. Giménez, Miguel Ángel López-Casado, Ma Isabel Torres, Ángel Cebolla, Carolina Sousa, Francisco Barro, Fernando Pistón
Software Mentions: 7
Published: almost 12 years ago

10.1371/journal.pone.0253779

Altered states phenomena induced by visual flicker light stimulation
Cited by: 7
Author(s): Marie Therese Bartossek, Johanna Kemmerer, Timo Torsten Schmidt
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0210467

Literature optimized integration of gene expression for organ-specific evaluation of toxicogenomics datasets
Cited by: 0
Author(s): Katerina Taškova, Jean-Fred Fontaine, Ralf Mrowka, Miguel A. Andrade‐Navarro
Software Mentions: 6
Published: almost 6 years ago

10.3390/nu10010045

Relationships between Breastfeeding Patterns and Maternal and Infant Body Composition over the First 12 Months of Lactation
Cited by: 31
Author(s): Zoya Gridneva, Alethea Rea, Anna R. Hepworth, Leigh C. Ward, Ching Tat Lai, Peter Hartmann, Donna T. Geddes
Software Mentions: 6
Published: almost 7 years ago

10.1093/conphys/coaa034

Does a cannibal feeding strategy impart differential metabolic performance in young burbot (Lota lota maculosa)?
Cited by: 0
Author(s): Amanda J. Frazier, Nathan R. Jensen, Shawn P. Young, Anne E. Todgham
Software Mentions: 6
Published: almost 5 years ago

10.1111/obes.12294

Semi‐parametric Regression under Model Uncertainty: Economic Applications
Cited by: 2
Author(s): Gertraud Malsiner‐Walli, Paul Hofmarcher, Bettina Grün
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12870-016-0729-0

Gene expression profiling of the green seed problem in Soybean
Cited by: 32
Author(s): Renake Nogueira Teixeira, Wilco Ligterink, J. de B. França Neto, Henk W. M. Hilhorst, Edvaldo Aparecido Amaral da Silva
Software Mentions: 6
Published: almost 9 years ago

10.1186/s40168-018-0507-3

Evaluation of bias induced by viral enrichment and random amplification protocols in metagenomic surveys of saliva DNA viruses
Cited by: 64
Author(s): Marcos Parras-Moltó, Ana Rodríguez-Galet, Patricia Suárez-Rodríguez, Alberto López-Bueno
Software Mentions: 6
Published: over 6 years ago

10.1038/srep06460

Testing an unusual in vivo vessel network model: a method to study angiogenesis in the colonial tunicate Botryllus schlosseri
Cited by: 19
Author(s): Fabio Gasparini, Federico Caicci, Francesca Rigon, Giovanna Zaniolo, Lucia Manni
Software Mentions: 6
Published: about 10 years ago

10.15252/msb.20199156

Endoplasmic reticulum stress actively suppresses hepatic molecular identity in damaged liver
Cited by: 19
Author(s): Vanessa Dubois, Céline Gheeraert, Wouter Vankrunkelsven, Julie Dubois-Chevalier, Hélène Dehondt, Marie Bobowski-Gérard, Manjula Vinod, Francesco Paolo Zummo, Fabian Güiza, Maheul Ploton, Emilie Dorchies, Laurent Pineau, Alexis Boulinguiez, Emmanuelle Vallez, Eloïse Woitrain, Eric Baugé, Fanny Lalloyer, Christian Duhem, Nabil Rabhi, Ronald E. van Kesteren, Cheng Ming Chiang, Steve Lancel, Hélène Duez, Jean-Sébastien Annicotte, Réjane Paumelle, Ilse Vanhorebeek, Greet Van den Berghe, Bart Staels, Philippe Lefèbvre, Jérôme Eeckhoute
Software Mentions: 6
Published: over 4 years ago

10.1007/s00572-021-01042-5

Ancient lineages of arbuscular mycorrhizal fungi provide little plant benefit
Cited by: 21
Author(s): Verena Säle, Javier Palenzuela, Concepción Azcón–Aguilar, Iván Sánchez-Castro, Gladstone Alves da Silva, Benjamin Seitz, Ewald Sieverding, Marcel G. A. van der Heijden, Fritz Oehl
Software Mentions: 6
Published: over 3 years ago

10.3389/fpsyg.2020.601574

Coronavirus Disease Stress Among Italian Healthcare Workers: The Role of Coping Humor
Cited by: 32
Author(s): Carla Canestrari, Ramona Bongelli, Alessandra Fermani, Ilaria Riccioni, Alessia Bertolazzi, Morena Muzi, Roberto Burro
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pone.0090898

Reduced-Gliadin Wheat Bread: An Alternative to the Gluten-Free Diet for Consumers Suffering Gluten-Related Pathologies
Cited by: 79
Author(s): Javier Gil-Humanes, Fernando Pistón, Rossana Altamirano-Fortoul, Ana Real, Isabel Comino, Carolina Sousa, Cristina M. Rosell, Francisco Barro
Software Mentions: 6
Published: over 10 years ago

10.1186/s12885-016-2178-4

Genetic and cellular studies highlight that A Disintegrin and Metalloproteinase 19 is a protective biomarker in human prostate cancer
Cited by: 13
Author(s): Gerard F. Hoyne, Caoline Rudnicka, Qing‐Xiang Amy Sang, Mark D. Roycik, Sarah Howarth, Peter J. Leedman, Markus P. Schlaich, Patrick A. Candy, Vance B. Matthews
Software Mentions: 5
Published: over 8 years ago

10.1007/s12035-020-01983-6

Transcriptome Analysis of iPSC-Derived Neurons from Rubinstein-Taybi Patients Reveals Deficits in Neuronal Differentiation
Cited by: 15
Author(s): Luciano Calzari, Matteo Barcella, Valentina Alari, Daniele Braga, Rafael Muñoz‐Viana, Cristina Barlassina, Palma Finelli, Cristina Gervasini, Ángel Barco, Silvia Russo, Lidia Larizza
Software Mentions: 5
Published: over 4 years ago

10.1038/srep39002

Phenotypic plasticity in sex pheromone production in Bicyclus anynana butterflies
Cited by: 28
Author(s): Emilie Dion, Antónia Monteiro, Joanne Y. Yew
Software Mentions: 5
Published: almost 8 years ago

10.1186/s12974-020-1706-y

Neonatal hypoxia-ischemia in rat elicits a region-specific neurotrophic response in SVZ microglia
Cited by: 14
Author(s): Urs Fisch, Catherine Brégère, Florian Geier, Laurie Chicha, Raphael Guzman
Software Mentions: 5
Published: almost 5 years ago

10.1186/s13148-020-00829-1

Underestimated effect of intragenic HIV-1 DNA methylation on viral transcription in infected individuals
Cited by: 12
Author(s): Sam Kint, Wim Trypsteen, Ward De Spiegelaere, Eva Malatinková, Sabine Kinloch-de Loës, Tim De Meyer, Wim Van Criekinge, Linos Vandekerckhove
Software Mentions: 5
Published: over 4 years ago

10.1186/1471-2164-15-537

Distribution of segmental duplications in the context of higher order chromatin organisation of human chromosome 7
Cited by: 6
Author(s): Grit Ebert, Anne Steininger, Robert Weißmann, Vivien Boldt, Allan Lind-Thomsen, Jana Grune, Stefan Badelt, Melanie Heßler, Matthias Peiser, Manuel Hitzler, Lars Riff Jensen, Ines Müller, Hao Hu, Peter F. Arndt, Andreas W. Kuß, Katrin Tebel, Reinhard Ullmann
Software Mentions: 5
Published: over 10 years ago

10.1371/journal.pone.0017388

Azacytidine and Decitabine Induce Gene-Specific and Non-Random DNA Demethylation in Human Cancer Cell Lines
Cited by: 129
Author(s): Sabine Hagemann, Oliver Heil, Frank Lyko, Bodo Brueckner
Software Mentions: 5
Published: over 13 years ago

10.1186/s12284-020-00424-1

Genome Wide Association Study Pinpoints Key Agronomic QTLs in African Rice Oryza glaberrima
Cited by: 12
Author(s): Philippe Cubry, Hélène Pidon, Kim Nhung Ta, Christine Tranchant‐Dubreuil, Anne-Céline Thuillet, Maria Holzinger, Hélène Adam, Honoré Kam, Harold Chrestin, Alain Ghesquière, F. Ochsenbein, François Sabot, Yves Vigouroux, Laurence Albar, Stéfan Jouannic
Software Mentions: 5
Published: about 4 years ago

10.1107/S0907444911049791

Conventions and workflows for using Situs
Cited by: 157
Author(s): Willy Wriggers
Software Mentions: 5
Published: over 12 years ago

10.1038/s41598-021-83886-7

Using protein turnover to expand the applications of transcriptomics
Cited by: 2
Author(s): Marissa A. Smail, James Reigle, Robert E. McCullumsmith
Software Mentions: 4
Published: over 3 years ago

10.1038/s41598-020-67743-7

Multivariate analysis reveals differentially expressed genes among distinct subtypes of diffuse astrocytic gliomas: diagnostic implications
Cited by: 10
Author(s): Nerea González‐García, Ana Belén Nieto Librero, Ana Luísa Vital, Hermínio Tão, María González-Tablas, Álvaro Otero, Purificación Galindo-Villardón, Alberto Órfão, María Dolores Tabernero
Software Mentions: 4
Published: over 4 years ago

10.18632/oncotarget.9421

microRNA-7-5p inhibits melanoma cell proliferation and metastasis by suppressing RelA/NF-κB
Cited by: 66
Author(s): Keith M. Giles, Rikki A. M. Brown, Clarissa Ganda, Melissa J. Podgorny, Patrick A. Candy, Larissa Wintle, Kirsty Richardson, Felicity C. Kalinowski, Lisa M. Stuart, Michael R. Epis, Nikolas K. Haass, Meenhard Herlyn, Peter J. Leedman
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0163476

An Exploration of Human Well-Being Bundles as Identifiers of Ecosystem Service Use Patterns
Cited by: 26
Author(s): Maike Hamann, Reinette Biggs, Belinda Reyers
Software Mentions: 4
Published: about 8 years ago

10.1186/s12915-021-00991-9

Long-term persistence of supernumerary B chromosomes in multiple species of Astyanax fish
Cited by: 6
Author(s): Duílio Mazzoni Zerbinato de Andrade Silva, Francisco J. Ruíz-Ruano, Ricardo Utsunomia, María Martín-Peciña, Jonathan Pena Castro, Paula Paccielli Freire, Robson Francisco Carvalho, Diogo Teruo Hashimoto, Alexander Suh, Cláudio Oliveira, Fábio Porto‐Foresti, Roberto Ferreira Artoni, Fausto Foresti, Juan Pedro M. Camacho
Software Mentions: 4
Published: over 3 years ago

10.1093/bioinformatics/btt294

SVGenes: a library for rendering genomic features in scalable vector graphic format
Cited by: 2
Author(s): Graham J. Etherington, Dan MacLean
Software Mentions: 4
Published: over 11 years ago

10.3897/BDJ.4.e8032

Taxonomic revision of Stigmatomma Roger (Hymenoptera: Formicidae) in the Malagasy region
Cited by: 3
Author(s): Flávia A. Esteves, Brian L. Fisher
Software Mentions: 4
Published: over 8 years ago

10.3389/fmicb.2013.00025

The distribution of thiamin and pyridoxine in the western tropical North Atlantic Amazon River plume
Cited by: 13
Author(s): Laila Pualani Barada, Lynda S. Cutter, Joseph P. Montoya, Eric A. Webb, Douglas G. Capone, Sergio A. Sañudo‐Wilhelmy
Software Mentions: 4
Published: almost 12 years ago

10.1371/journal.pgen.1002658

Dynamic Deposition of Histone Variant H3.3 Accompanies Developmental Remodeling of the Arabidopsis Transcriptome
Cited by: 113
Author(s): Heike Wollmann, Sarah Holec, Keith Alden, Neil D. Clarke, Pierre-Étienne Jacques, Frédéric Berger
Software Mentions: 4
Published: over 12 years ago

10.1371/journal.ppat.1005672

A Novel Mechanism of Host-Pathogen Interaction through sRNA in Bacterial Outer Membrane Vesicles
Cited by: 297
Author(s): Katja Koeppen, Thomas H. Hampton, Michael Jarek, Maren Scharfe, Scott A. Gerber, Daniel W. Mielcarz, Elora G. Demers, Emily L. Dolben, John H. Hammond, Deborah A. Hogan, Bruce A. Stanton
Software Mentions: 3
Published: over 8 years ago

10.1186/s12863-017-0569-4

Identification and integrated analysis of differentially expressed lncRNAs and circRNAs reveal the potential ceRNA networks during PDLSC osteogenic differentiation
Cited by: 124
Author(s): Xiuge Gu, Mengying Li, Yongfeng Jin, Dongxu Liu, Fulan Wei
Software Mentions: 3
Published: almost 7 years ago

10.1186/1471-2164-13-623

High-resolution genome-wide scan of genes, gene-networks and cellular systems impacting the yeast ionome
Cited by: 46
Author(s): Danni Yu, John Danku, Ivan Baxter, Sungjin Kim, Olena K. Vatamaniuk, Olga Vitek, Mourad Ouzzani, David E. Salt
Software Mentions: 3
Published: about 12 years ago

10.1186/s12864-021-07696-x

kataegis: an R package for identification and visualization of the genomic localized hypermutation regions using high-throughput sequencing
Cited by: 6
Author(s): Xue Lü, Yingying Hua, Shuanglin Gu, Lili Lv, Xingyu Li, Pin Chen, Peng Dai, Yunyun Hu, Anna Liu, Jian Li
Software Mentions: 3
Published: over 3 years ago

10.26508/lsa.202000663

Splicing of enhancer-associated lincRNAs contributes to enhancer activity
Cited by: 22
Author(s): Jennifer Y. Tan, Adriano Biasini, Robert S. Young, Ana C. Marques
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pone.0150306

Effect of Saccharomyces boulardii and Mode of Delivery on the Early Development of the Gut Microbial Community in Preterm Infants
Cited by: 28
Author(s): Natalia Żeber‐Lubecka, Maria Kulecka, Filip Ambrożkiewicz, Agnieszka Paziewska, Miłosz Lechowicz, Ewa Konopka, U. Majewska, Maria Katarzyna Borszewska−Kornacka, Michał Mikula, Božena Cukrowská, Jerzy Ostrowski
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0065894

Drug Promiscuity in PDB: Protein Binding Site Similarity Is Key
Cited by: 121
Author(s): V. Joachim Haupt, Simone Daminelli, Michael Schroeder
Software Mentions: 3
Published: over 11 years ago

10.1371/journal.pone.0244435

The effect of tree age, daily sap volume and date of sap collection on the content of minerals and heavy metals in silver birch (Betula pendula Roth) tree sap
Cited by: 4
Author(s): Paweł Staniszewski, Maciej Bilek, Wojciech Szwerc, R. Tomusiak, Paweł Osiak, Ryszard Kocjan, Tadeusz Moskalik
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0158519

Bark and Ambrosia Beetles Show Different Invasion Patterns in the USA
Cited by: 26
Author(s): Davide Rassati, Massimo Faccoli, Robert A. Haack, Robert J. Rabaglia, Edoardo Petrucco Toffolo, Andrea Battisti, Lorenzo Marini
Software Mentions: 3
Published: over 8 years ago

10.3390/cancers13020348

Discovery of Functional Alternatively Spliced PKM Transcripts in Human Cancers
Cited by: 6
Author(s): Xiangyu Li, Woonghee Kim, Muhammad Arif, Chunxia Gao, Andreas Hober, David Kotol, Linnéa Strandberg, Björn Forsström, Åsa Sivertsson, Per Oksvold, Hasan Türkez, Morten Grötli, Yusuke Sato, Haruki Kume, Seishi Ogawa, Jan Borén, Jens Nielsen, Mathias Uhlén, Cheng Cheng Zhang, Adil Mardinoğlu
Software Mentions: 3
Published: almost 4 years ago

10.1016/j.devcel.2017.05.021

Distinct Roles of RNA Helicases MVH and TDRD9 in PIWI Slicing-Triggered Mammalian piRNA Biogenesis and Function
Cited by: 60
Author(s): Joanna M. Wenda, David Homolka, Zhaolin Yang, Pietro Spinelli, Ravi Sachidanandam, Radha Raman Pandey, Ramesh S. Pillai
Software Mentions: 3
Published: over 7 years ago

10.3390/ijerph18052212

In Touch with the Heartbeat: Newborns’ Cardiac Sensitivity to Affective and Non-Affective Touch
Cited by: 8
Author(s): Letizia Della Longa, Danica Dragovic, Teresa Farroni
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms20051175

Molecular Characterization of Non-responders to Chemotherapy in Serous Ovarian Cancer
Cited by: 9
Author(s): Megan McDonald, E. Salinas, Eric J. Devor, A.M. Newtson, Kristina W. Thiel, Michael J. Goodheart, David Bender, Brian J. Smith, Kimberly K. Leslie, Jesús González Bosquet
Software Mentions: 3
Published: over 5 years ago

10.1186/s12986-016-0116-8

Prolonged transfer of feces from the lean mice modulates gut microbiota in obese mice
Cited by: 46
Author(s): Maria Kulecka, Agnieszka Paziewska, Natalia Żeber‐Lubecka, Filip Ambrożkiewicz, Michał Kopczyński, Urszula Kuklinska, Kazimiera Pyśniak, Marta Gajewska, Michał Mikula, Jerzy Ostrowski
Software Mentions: 3
Published: over 8 years ago

10.3390/cancers13112843

Elevated Expression of the RAGE Variant-V in SCLC Mitigates the Effect of Chemotherapeutic Drugs
Cited by: 4
Author(s): Bindhu K. Madhavan, Zhe Han, B.K. Singh, Nico Bordt, Serap Kaymak, Obul Reddy Bandapalli, Lars Kihm, Khurrum Shahzad, Berend Isermann, Stephan Herzig, Peter P. Nawroth, Vaijayanti A. Kumar
Software Mentions: 2
Published: over 3 years ago

10.1111/pbi.13171

Strong temporal dynamics of QTL action on plant growth progression revealed through high‐throughput phenotyping in canola
Cited by: 42
Author(s): Dominic Knoch, Amine Abbadi, Fabian Grandke, Rhonda C. Meyer, Birgit Samans, Christian R. Werner, Rod J. Snowdon, Thomas Altmann
Software Mentions: 2
Published: over 5 years ago

10.1007/s11120-019-00681-2

From empirical to theoretical models of light response curves - linking photosynthetic and metabolic acclimation
Cited by: 41
Author(s): Helena A. Herrmann, Jean-Marc Schwartz, Giles N. Johnson
Software Mentions: 2
Published: about 5 years ago

10.7717/peerj.5181

Evaluation of standard imaging techniques and volumetric preservation of nervous tissue in genetically identical offspring of the crayfishProcambarus fallaxcf.virginalis(Marmorkrebs)
Cited by: 5
Author(s): Emanuel S. Nischik, Jakob Krieger
Software Mentions: 2
Published: over 6 years ago

10.1186/s13567-020-00818-5

A multivalent vaccine candidate targeting enterotoxigenic Escherichia coli fimbriae for broadly protecting against porcine post-weaning diarrhea
Cited by: 14
Author(s): Qiangde Duan, Shengmei Pang, Wenwen Wu, Boyu Jiang, Weiping Zhang, Siguo Liu, Xiaojun Wang, Zhiming Pan, Guoqiang Zhu
Software Mentions: 2
Published: over 4 years ago

10.3390/molecules26020270

Dynamic Preference for NADP/H Cofactor Binding/Release in E. coli YqhD Oxidoreductase
Cited by: 3
Author(s): Rajni Verma, J. Michael Ellis, Katie R. Mitchell-Koch
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0118591

A Protocol to Assess Insect Resistance to Heat Waves, Applied to Bumblebees (Bombus Latreille, 1802)
Cited by: 52
Author(s): Baptiste Martinet, Thomas Lecocq, Jérémy Smet, Pierre Rasmont
Software Mentions: 2
Published: over 9 years ago

10.3389/fsurg.2020.609661

Catheter Management and Risk Stratification of Patients With in Inpatient Treatment Due to Acute Epididymitis
Cited by: 3
Author(s): Mike Wenzel, Marina Deuker, Maria-Noemi Welte, Benedikt Hoeh, Felix Preißer, Till Homrich, Volkhard A. J. Kempf, Michael Hogardt, Philipp Mandel, Pierre I. Karakiewicz, Felix K.‐H. Chun, Luis A. Kluth
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0133033

Identification of Interactions between Abscisic Acid and Ribulose-1,5-Bisphosphate Carboxylase/Oxygenase
Cited by: 16
Author(s): Marek Gałka, Nandhakishore Rajagopalan, Leann Buhrow, Ken M. Nelson, Jacek Switala, Adrian J. Cutler, David R. J. Palmer, P.C. Loewen, Suzanne R. Abrams, Michèle C. Loewen
Software Mentions: 2
Published: over 9 years ago

10.1186/1471-2164-13-402

Global changes in gene expression during compatible and incompatible interactions of cowpea (Vigna unguiculata L.) with the root parasitic angiosperm Striga gesnerioides
Cited by: 29
Author(s): Kan Huang, Karolina E. Mellor, Shom N Paul, Mark Lawson, Aaron J. Mackey, Michael P. Timko
Software Mentions: 2
Published: over 12 years ago

10.1186/s12936-018-2576-y

Levels of human proteins in plasma associated with acute paediatric malaria
Cited by: 13
Author(s): Philippa Reuterswärd, Sofia Bergström, Judy Orikiiriza, Elisabeth Lindquist, Sven Bergström, Helene Andersson Svahn, Burcu Ayoglu, Mathias Uhlén, Mats Wahlgren, Johan Normark, Ulf Ribacke, Peter Nilsson
Software Mentions: 2
Published: about 6 years ago

10.1371/journal.pone.0101227

Fluorescence2D: Software for Accelerated Acquisition and Analysis of Two-Dimensional Fluorescence Spectra
Cited by: 3
Author(s): Evgenii L. Kovrigin
Software Mentions: 2
Published: over 10 years ago

10.1007/s10552-020-01366-1

Bladder cancer stage and mortality: urban vs. rural residency
Cited by: 8
Author(s): Marina Deuker, Lara Franziska Stolzenbach, Claudia Collà Ruvolo, Luigi Nocera, Zhe Tian, Frederik C. Roos, Andreas Becker, Luis A. Kluth, Derya Tilki, Shahrokh F. Shariat, Fred Saad, Felix K.‐H. Chun, Pierre I. Karakiewicz
Software Mentions: 2
Published: about 4 years ago

10.1038/s41598-021-86454-1

Longitudinal study of the scalp microbiome suggests coconut oil to enrich healthy scalp commensals
Cited by: 9
Author(s): Rituja Saxena, Parul Mittal, Cécile Clavaud, Darshan B. Dhakan, Nita Roy, Lionel Breton, Namita Misra, Vineet K. Sharma
Software Mentions: 2
Published: over 3 years ago

10.3390/genes11010052

Evaluation of the Abundance of DNA-Binding Transcription Factors in Prokaryotes
Cited by: 13
Author(s): Ignacio Escotto Sánchez, Rafael Hernandez-Guerrero, Paul E. Méndez-Monroy, Mario Alberto Martínez-Núñez, J. Antonio Ibarra, Ernesto Pérez‐Rueda
Software Mentions: 2
Published: almost 5 years ago

10.1002/ece3.6107

Genetic variability, community structure, and horizontal transfer of endosymbionts among three Asia II‐Bemisia tabaci mitotypes in Pakistan
Cited by: 11
Author(s): Jorge R. Paredes‐Montero, Muhammad Zia-ur-Rehman, Usman Hameed, Muhammad Saleem Haider, Hans-Werner Herrmann, Judith K. Brown
Software Mentions: 2
Published: almost 5 years ago

10.1107/S2052252517003475

New leads for fragment-based design of rhenium/technetium radiopharmaceutical agents
Cited by: 20
Author(s): Alice Brink, John R. Helliwell
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0208465

Dynamics based clustering of globin family members
Cited by: 5
Author(s): Dror Tobi
Software Mentions: 2
Published: almost 6 years ago

10.3390/ijms18122670

Evidence of Altered Glycosylation of Serum Proteins Prior to Pancreatic Cancer Diagnosis
Cited by: 23
Author(s): Shibu Krishnan, Harry J. Whitwell, Joy Cuenco, Aleksandra Gentry‐Maharaj, Usha Menon, Stephen P. Pereira, Marco Gaspari, John F. Timms
Software Mentions: 1
Published: almost 7 years ago

10.1186/1472-6807-12-17

Integrative structural modeling with small angle X-ray scattering profiles
Cited by: 92
Author(s): Dina Stroopinsky, Seung Joong Kim, Andrej Šali
Software Mentions: 1
Published: almost 13 years ago

10.1111/anec.12794

Repeating noninvasive risk stratification improves prediction of outcome in ICD patients
Cited by: 1
Author(s): Bert Vandenberk, Vincent Floré, Christian Röver, Mark A. Vos, Albert Dunnink, Dionyssios Leftheriotis, Tim Friede, Panagiota Flevari, Markus Zabel, Rik Willems
Software Mentions: 1
Published: over 4 years ago

10.1186/s12889-020-09145-y

Establishing seasonal and alert influenza thresholds in Morocco
Cited by: 3
Author(s): Ahmed Rguig, Imad Cherkaoui, Margaret McCarron, Hicham Oumzil, Soumia Triki, Houria Elmbarki, Abderrahman Bimouhen, Fatima El Falaki, Zakia Regragui, Hassan Ihazmad, Chakib Nejjari, Mohammed Youbi
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-244X-14-80

Attitudes of clinical staff toward the causes and management of aggression in acute old age psychiatry inpatient units
Cited by: 30
Author(s): Terence V. McCann, J. A. Baird, Eimear Muir‐Cochrane
Software Mentions: 1
Published: over 10 years ago

Projects: pypi: graphics

Papers Mentioning graphics 126