Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.cell.2015.01.006

https://doi.org/10.1016/j.cell.2015.01.006

Cited by: 626
Author(s): Diego Villar, Camille Berthelot, Sarah Aldridge, Tim Rayner, Margus Lukk, Miguel Pignatelli, Thomas J. Park, Robert Deaville, Jonathan Thor Erichsen, Anna J. Jasinska, James M. A. Turner, Mads F. Bertelsen, Elizabeth P. Murchison, Paul Flicek, Duncan T. Odom
Published: over 9 years ago

Software Mentions 17

bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: ShortRead
FASTQ input and manipulation
Papers that mentioned: 119
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: geiger
Analysis of Evolutionary Diversification
Papers that mentioned: 179
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: gtools
Various R Programming Tools
Papers that mentioned: 60
cran: plotrix
Various Plotting Functions
Papers that mentioned: 110
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: scales
Scale Functions for Visualization
Papers that mentioned: 104
cran: vioplot
Violin Plot
Papers that mentioned: 133
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: geiger
A radiation detection utility package
Papers that mentioned: 179
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: scales
Stats for Python processes
Papers that mentioned: 104