Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: vioplot

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/vioplot

Violin Plot
10 versions
Latest release: almost 2 years ago
11 dependent packages
10,297 downloads last month

Papers Mentioning vioplot 133

10.3389/fonc.2021.658165
Using Tumor-Infiltrating Immune Cells and a ceRNA Network Model to Construct a Prognostic Analysis Model of Thyroid Carcinoma
Cited by: 11
Author(s): Fan Zhang, Xiao‐Juan Yu, Zheyu Lin, Xichang Wang, Tengteng Gao, Di Teng, Weiping Teng
Software Mentions: 17
Published: over 3 years ago
10.1016/j.cell.2015.01.006
Enhancer Evolution across 20 Mammalian Species
Cited by: 626
Author(s): Diego Villar, Camille Berthelot, Sarah Aldridge, Tim Rayner, Margus Lukk, Miguel Pignatelli, Thomas J. Park, Robert Deaville, Jonathan Thor Erichsen, Anna J. Jasinska, James M. A. Turner, Mads F. Bertelsen, Elizabeth P. Murchison, Paul Flicek, Duncan T. Odom
Software Mentions: 17
Published: almost 10 years ago
10.1371/journal.pone.0136452
Estimating Limit Reference Points for Western Pacific Leatherback Turtles (Dermochelys coriacea) in the U.S. West Coast EEZ
Cited by: 14
Author(s): K. Alexandra Curtis, Jeffrey E. Moore, Scott R. Benson
Software Mentions: 16
Published: about 9 years ago
10.7150/ijms.53531
Identification novel prognostic signatures for Head and Neck Squamous Cell Carcinoma based on ceRNA network construction and immune infiltration analysis
Cited by: 18
Author(s): Haiting Zhou, Yi He, Lingling Li, Cheng Wu, Guoqing Hu
Software Mentions: 16
Published: almost 4 years ago
10.1186/s12859-021-03970-7
stochprofML: stochastic profiling using maximum likelihood estimation in R
Cited by: 3
Author(s): Lisa Amrhein, Christiane Fuchs
Software Mentions: 14
Published: over 3 years ago
10.1111/jcmm.15705
Collagen Type III Alpha 1 chain regulated by GATA‐Binding Protein 6 affects Type II IFN response and propanoate metabolism in the recurrence of lower grade glioma
Cited by: 18
Author(s): Runzhi Huang, Zhenyu Li, Xiaolong Zhu, Penghui Yan, Dianwen Song, Huabin Yin, Peng Hu, Ruoyi Lin, Shengyu Wu, Tong Meng, Jie Zhang, Zongqiang Huang
Software Mentions: 14
Published: over 4 years ago
10.1038/s41598-021-97362-9
N6-methylandenosine-related lncRNAs play an important role in the prognosis and immune microenvironment of pancreatic ductal adenocarcinoma
Cited by: 5
Author(s): Yuhai Hu, Yiping Chen
Software Mentions: 14
Published: about 3 years ago
10.3389/fonc.2021.623170
Clinical and Prognostic Pan-Cancer Analysis of N6-Methyladenosine Regulators in Two Types of Hematological Malignancies: A Retrospective Study Based on TCGA and GTEx Databases
Cited by: 21
Author(s): Xiangsheng Zhang, Li-Ye Zhong, Zhilin Zou, Guosheng Liang, Zhenye Tang, Kai Li, Shuhua Tan, Yongmei Huang, Xiao Zhu
Software Mentions: 13
Published: over 3 years ago
10.3389/fgene.2020.00620
An Analysis Regarding the Association Between the ISLR Gene and Gastric Carcinogenesis
Cited by: 13
Author(s): Shu Li, Wei Zhao, Manyi Sun
Software Mentions: 13
Published: over 4 years ago
10.1186/s12967-021-02800-x
Identification of 4 immune cells and a 5-lncRNA risk signature with prognosis for early-stage lung adenocarcinoma
Cited by: 25
Author(s): Liancai Mu, Ke Ding, Ranran Tu, Wei Yang
Software Mentions: 12
Published: over 3 years ago
10.1371/journal.pone.0219698
Analysis of gene expression in rheumatoid arthritis and related conditions offers insights into sex-bias, gene biotypes and co-expression patterns
Cited by: 11
Author(s): Alexander Platzer, Thomas Nußbaumer, Thomas Karonitsch, Josef S. Smolen, Daniel Aletaha
Software Mentions: 12
Published: over 5 years ago
10.1371/journal.pone.0238835
Analyzing the fine structure of distributions
Cited by: 35
Author(s): Michael C. Thrun, Tino Gehlert, Alfred Ultsch
Software Mentions: 12
Published: about 4 years ago
10.3389/fgene.2021.689159
Analyzing Roles of NUSAP1 From Clinical, Molecular Mechanism and Immune Perspectives in Hepatocellular Carcinoma
Cited by: 3
Author(s): Wenjie Zhu, Jian Xu, Zehao Chen, Jianxin Jiang
Software Mentions: 12
Published: over 3 years ago
10.3389/fcvm.2021.624714
Identification of Potential Biomarkers and Immune Infiltration Characteristics in Idiopathic Pulmonary Arterial Hypertension Using Bioinformatics Analysis
Cited by: 21
Author(s): Haowei Zeng, Xiaoqin Liu, Yushun Zhang
Software Mentions: 11
Published: almost 4 years ago
10.3389/fmolb.2021.611508
CXCL10 is a Tumor Microenvironment and Immune Infiltration Related Prognostic Biomarker in Pancreatic Adenocarcinoma
Cited by: 17
Author(s): Huimin Huang, Wangxiao Zhou, Renpin Chen, Bingfeng Xiang, Shipeng Zhou, Linhua Lan
Software Mentions: 11
Published: almost 4 years ago
10.1186/s12575-021-00152-w
N6-Methyladenosine Related Long Non-Coding RNAs and Immune Cell Infiltration in the Tumor Microenvironment of Gastric Cancer
Cited by: 9
Author(s): Zhong Lin Yu, Zheng Zhu
Software Mentions: 11
Published: over 3 years ago
10.3389/fonc.2021.646060
Immune-Related Gene SERPINE1 Is a Novel Biomarker for Diffuse Lower-Grade Gliomas via Large-Scale Analysis
Cited by: 20
Author(s): Xiaoming Huang, Fenglin Zhang, Dong He, Xiaoshuai Ji, Jiajia Gao, Wenqing Liu, Yunda Wang, Qian Liu, Tao Xin
Software Mentions: 11
Published: over 3 years ago
10.3389/fimmu.2021.664845
CD2 Is a Novel Immune-Related Prognostic Biomarker of Invasive Breast Carcinoma That Modulates the Tumor Microenvironment
Cited by: 24
Author(s): Yanzhu Chen, Zhishang Meng, Lin Zhang, Feng Liu
Software Mentions: 11
Published: over 3 years ago
10.3389/fonc.2020.570654
Prognostic Role of Tumor Mutation Burden Combined With Immune Infiltrates in Skin Cutaneous Melanoma Based on Multi-Omics Analysis
Cited by: 16
Author(s): Junya Yan, Xiaowen Wu, Jiayi Yu, Yanyan Zhu, Shundong Cang
Software Mentions: 11
Published: about 4 years ago
10.3389/pore.2021.1609852
Identification of a Gene Prognostic Model of Gastric Cancer Based on Analysis of Tumor Mutation Burden
Cited by: 9
Author(s): Weijun Ma, Weidong Li, Xu Liu, Lu Liu, Xinbing Yu, Liping Yang, Mingxu Da
Software Mentions: 11
Published: about 3 years ago
10.3389/fimmu.2018.02191
Single Cell RNA Sequencing Identifies HSPG2 and APLNR as Markers of Endothelial Cell Injury in Systemic Sclerosis Skin
Cited by: 48
Author(s): Sokratis A. Apostolidis, Giuseppina Stifano, Tracy Tabib, Lisa Rice, Christina Morse, Bashar Kahaleh, Robert Lafyatis
Software Mentions: 11
Published: about 6 years ago
10.1155/2021/9911184
Identification of Disease-Specific Hub Biomarkers and Immune Infiltration in Osteoarthritis and Rheumatoid Arthritis Synovial Tissues by Bioinformatics Analysis
Cited by: 7
Author(s): Fei Sun, Jian Zhou, Peiyu Pu, Chen Qiu, Jia rui Cao, Hao Peng
Software Mentions: 9
Published: over 3 years ago
10.18632/aging.104064
Clinical and prognostic pan-cancer analysis of m6A RNA methylation regulators in four types of endocrine system tumors
Cited by: 29
Author(s): Kai Li, Hui Luo, Hui Luo, Xiao Zhu
Software Mentions: 9
Published: about 4 years ago
10.3389/fpls.2017.01160
Repeated Stand-Replacing Crown Fires Affect Seed Morphology and Germination in Aleppo pine
Cited by: 7
Author(s): Antonio Saracino, Alessandro Bellino, Emilia Allevato, Antonio Mingo, Stefano Conti, Sergio Rossi, Giuliano Bonanomi, Domenico Carputo, Stefano Mazzoleni
Software Mentions: 9
Published: over 7 years ago
10.3389/fonc.2020.573141
Significance of Tumor Mutation Burden in Immune Infiltration and Prognosis in Cutaneous Melanoma
Cited by: 57
Author(s): Kai Kang, Fucun Xie, Jianshan Mao, Yi Bai, Xiang Wang
Software Mentions: 9
Published: about 4 years ago
10.1042/BSR20202898
Comprehensive analysis reveals a prognostic and therapeutic biomarker CD3D in the breast carcinoma microenvironment
Cited by: 13
Author(s): Zhipeng Zhu, Weipeng Ye, Xiaofang Wu, Sihao Lin, Jiuhua Xu, Lulu Li, Jiayi Li, Haibin Wang, Zhengjie Huang
Software Mentions: 9
Published: almost 4 years ago
10.18632/aging.203290
Expression mode and prognostic value of FXYD family members in colon cancer
Cited by: 8
Author(s): Ming Jin, Hui Zhang, Jun Yang, Zheng Zhao, Kaitai Liu
Software Mentions: 9
Published: over 3 years ago
10.3389/fgene.2021.623424
Correlations Between Tumor Mutation Burden and Immunocyte Infiltration and Their Prognostic Value in Colon Cancer
Cited by: 17
Author(s): Zhangjian Zhou, Xin Xie, Xuan Wang, Xin Zhang, Wenxin Li, Tuanhe Sun, Yifan Cai, Jianhua Wu, Chengxue Dang, Hao Zhang
Software Mentions: 9
Published: almost 4 years ago
10.3389/fgene.2020.576566
Systematic Profiling of Immune Risk Model to Predict Survival and Immunotherapy Response in Head and Neck Squamous Cell Carcinoma
Cited by: 9
Author(s): Xingyu Liu, Jiarui Chen, Wei Lu, Zhao-Yi Zeng, Jiali Li, Xueping Jiang, Yanping Gao, Yan Gong, Qiuji Wu, Conghua Xie
Software Mentions: 9
Published: about 4 years ago
10.3389/fonc.2021.654388
MYD88 Is a Potential Prognostic Gene and Immune Signature of Tumor Microenvironment for Gliomas
Cited by: 13
Author(s): Qinglong Guo, Xing Xiao, Jinsen Zhang
Software Mentions: 8
Published: over 3 years ago
10.1155/2021/7488188
m6A-Related lncRNA to Develop Prognostic Signature and Predict the Immune Landscape in Bladder Cancer
Cited by: 28
Author(s): Zuwei Li, Yuwu Li, Weizhang Zhong, Peiyuan Huang
Software Mentions: 8
Published: over 3 years ago
10.1002/cam4.4156
Comprehensive analysis of a new prognosis signature based on histone deacetylases in clear cell renal cell carcinoma
Cited by: 6
Author(s): Fajuan Cheng, Bin Zheng, Jianwei Wang, Guiting Zhao, Zhongshun Yao, Zhihong Niu
Software Mentions: 8
Published: over 3 years ago
10.1038/s41598-017-13731-3
The Role of Chromatin Density in Cell Population Heterogeneity during Stem Cell Differentiation
Cited by: 16
Author(s): Mahdi Golkaram, Jaeshin Jang, Stefan Hellander, Kenneth S. Kosik, Linda R. Petzold
Software Mentions: 8
Published: about 7 years ago
10.7150/ijms.51064
Tumor Mutation Burden, Immune Cell Infiltration, and Construction of Immune-Related Genes Prognostic Model in Head and Neck Cancer
Cited by: 32
Author(s): Aimin Jiang, Mengdi Ren, Na Liu, Huan Gao, Jingjing Wang, Xiaoqiang Zheng, Xiao Fu, Xuan Liu, Zhiping Ruan, Tao Tian, Yu Yao
Software Mentions: 8
Published: almost 4 years ago
10.3389/fcvm.2020.586871
Predicting Diagnostic Gene Biomarkers Associated With Immune Infiltration in Patients With Acute Myocardial Infarction
Cited by: 64
Author(s): Enfa Zhao, Hang Xie, Yushun Zhang
Software Mentions: 8
Published: about 4 years ago
10.1042/BSR20204456
A new m6A methylation-related gene signature for prognostic value in patient with urothelial carcinoma of the bladder
Cited by: 9
Author(s): Bin Zheng, Jianwei Wang, Guiting Zhao, Xiaoxu Chen, Zhongshun Yao, Wei He, Wei He
Software Mentions: 8
Published: over 3 years ago
10.3389/fimmu.2021.666355
Revealing the Immune Infiltration Landscape and Identifying Diagnostic Biomarkers for Lumbar Disc Herniation
Cited by: 32
Author(s): Linbang Wang, Tao He, Jingkun Liu, Jiaojiao Tai, Bing Wang, Lanyue Zhang, Zhengxue Quan
Software Mentions: 8
Published: over 3 years ago
10.3389/fnins.2021.613329
Integrated Transcriptional Profiling Analysis and Immune-Related Risk Model Construction for Intracranial Aneurysm Rupture
Cited by: 4
Author(s): Dezhi Shan, Xing Guo, Guozheng Yang, Zheng He, Rongrong Zhao, Hao Xue, Gang Li
Software Mentions: 8
Published: over 3 years ago
10.1038/srep39527
Synergetic effects of DNA methylation and histone modification during mouse induced pluripotent stem cell generation
Cited by: 13
Author(s): Guiying Wang, Rong Weng, Yuanyuan Lan, Xudong Guo, Qidong Liu, Xiaoqin Liu, Chenqi Lu, Jiuhong Kang
Software Mentions: 7
Published: almost 8 years ago
10.18632/aging.202269
Immune profile of the tumor microenvironment and the identification of a four-gene signature for lung adenocarcinoma
Cited by: 15
Author(s): Tao Fan, Mark Zhu, Li-Yu Wang, Yu Liu, He Tian, Zheng Yang, Fengwei Tan, Nan Sun, Chunxiang Li, Jie He
Software Mentions: 7
Published: almost 4 years ago
10.1186/s12915-020-0752-3
Bivalent promoter hypermethylation in cancer is linked to the H327me3/H3K4me3 ratio in embryonic stem cells
Cited by: 33
Author(s): Donnchadh S. Dunican, Heidi K. Mjoseng, Leanne Duthie, Ilya M. Flyamer, Wendy A. Bickmore, Richard R. Meehan
Software Mentions: 7
Published: over 4 years ago
10.1186/s12862-016-0858-y
Cambrian suspension-feeding lobopodians and the early radiation of panarthropods
Cited by: 22
Author(s): Jean‐Bernard Caron, Cédric Aria
Software Mentions: 7
Published: almost 8 years ago
10.1186/s12894-021-00795-7
Comprehensive analysis of tumour mutational burden and its clinical significance in prostate cancer
Cited by: 14
Author(s): Limin Wang, Shucheng Pan, Binbin Zhu, Zhenliang Yu, Wei Wang
Software Mentions: 7
Published: over 3 years ago
10.1186/s12935-021-01774-6
Tumor mutation burden in connection with immune-related survival in uterine corpus endometrial carcinoma
Cited by: 14
Author(s): Ling Zhao, Xueshu Fu, Xiling Han, Yu Yao, Yaping Ye, Jun Gao
Software Mentions: 7
Published: almost 4 years ago
10.3389/fcell.2021.659080
ANXA1 as a Prognostic and Immune Microenvironmental Marker for Gliomas Based on Transcriptomic Analysis and Experimental Validation
Cited by: 8
Author(s): Zhongxiao Lin, Ming‐Shien Wen, Enxing Yu, Xiao Yan Lin, Hua Wang, Jiayu Chen, Chaojie Yao, Hengli Zhang, Junnan Ru, Kankai Wang, Ying Zhang, Lijie Huang, Qichuan Zhuge, Shuxu Yang
Software Mentions: 7
Published: over 3 years ago
10.3389/fcell.2021.658642
HNRNPA2B1 Affects the Prognosis of Esophageal Cancer by Regulating the miR-17-92 Cluster
Cited by: 21
Author(s): Kexin Li, Jiongyu Chen, Xiaoying Lou, Yiling Li, Benheng Qian, Danfei Xu, Yue Wu, Shaohui Ma, Donghong Zhang, Wei Cui
Software Mentions: 7
Published: over 3 years ago
10.3389/fmolb.2021.665222
Identification of the m6A RNA Methylation Regulators WTAP as a Novel Prognostic Biomarker and Genomic Alterations in Cutaneous Melanoma
Cited by: 12
Author(s): Ziyi Feng, Ting Wang, Xin Su, Shu Guo
Software Mentions: 7
Published: over 3 years ago
10.3389/fonc.2021.580886
Radiomics Nomogram for Identifying Sub-1 cm Benign and Malignant Thyroid Lesions
Cited by: 7
Author(s): Xinxin Wu, Jingjing Li, Yakui Mou, Yao Yao, Jingjing Cui, Ning Mao, Xuejiao Song
Software Mentions: 6
Published: over 3 years ago
10.3389/fimmu.2021.726747
Identifying Immune Cell Infiltration and Effective Diagnostic Biomarkers in Rheumatoid Arthritis by Bioinformatics Analysis
Cited by: 45
Author(s): Sheng Zhou, Hongmei Lü, Min Xiong
Software Mentions: 6
Published: over 3 years ago
10.1186/s12885-021-08083-1
Gene expression and immune infiltration in melanoma patients with different mutation burden
Cited by: 8
Author(s): Liwei Wang, Chuanxi Fu, Rui Li, Lei Shi, Guosheng Zhao, Yan Zhang
Software Mentions: 6
Published: over 3 years ago
10.7150/ijms.51918
Exploration of the relationship between tumor mutation burden and immune infiltrates in colon adenocarcinoma
Cited by: 3
Author(s): Rong Ouyang, Zhongzhuan Li, Peng Peng, Jinxiu Zhang, Jun Li, Mengbin Qin, Jiean Huang
Software Mentions: 6
Published: almost 4 years ago
10.18632/oncotarget.22942
S-adenosyl-methionine (SAM) alters the transcriptome and methylome and specifically blocks growth and invasiveness of liver cancer cells
Cited by: 33
Author(s): Yan Wang, Zhong Sheng Sun, Moshe Szyf
Software Mentions: 6
Published: almost 7 years ago
10.3389/fcell.2021.622021
Identification of Potential ceRNA Network and Patterns of Immune Cell Infiltration in Systemic Sclerosis-Associated Interstitial Lung Disease
Cited by: 6
Author(s): Qiuhong Wu, Yang Liu, Yan Xie, Shixiong Wei, Yi Liu
Software Mentions: 6
Published: over 3 years ago
10.1155/2020/2319194
Immune-Related lncRNA Correlated with Transcription Factors Provide Strong Prognostic Prediction in Gliomas
Cited by: 4
Author(s): Yantao Tian, Yiquan Ke, Yanxia Ma
Software Mentions: 6
Published: about 4 years ago
10.3389/fmolb.2020.00148
Friend or Foe: Prognostic and Immunotherapy Roles of BTLA in Colorectal Cancer
Cited by: 23
Author(s): Jingjing Song, Lihui Wu
Software Mentions: 6
Published: over 4 years ago
10.3390/biom9010012
Integrated Transcriptome Analysis Reveals Plant Hormones Jasmonic Acid and Salicylic Acid Coordinate Growth and Defense Responses upon Fungal Infection in Poplar
Cited by: 63
Author(s): Jie Luo, Wenxiu Xia, Pei Cao, Zheng’ang Xiao, Yan Zhang, Meifeng Liu, Chengjun Zhan, Nian Wang
Software Mentions: 6
Published: almost 6 years ago
10.1371/journal.pone.0254829
Tumor infiltrating lymphocytes associated competitive endogenous RNA networks as predictors of outcome in hepatic carcinoma based on WGCNA analysis
Cited by: 1
Author(s): Ying He, Xu Rui, Li Peng, Xiaoyu Hu
Software Mentions: 6
Published: over 3 years ago
10.1371/journal.pone.0161018
A Reassessment of the Impact of European Contact on the Structure of Native American Genetic Diversity
Cited by: 30
Author(s): Keith Hunley, Kiela Gwin, Brendan Liberman
Software Mentions: 6
Published: about 8 years ago
10.1186/s12894-021-00880-x
Cross-talk and clinical value of m[superscript 6]A regulatory gene in bladder cancer
Cited by: 0
Author(s): Benzheng Zhou, Qin Luo, Ye Zhang
Software Mentions: 6
Published: about 3 years ago
10.1371/journal.pone.0219072
Defining ecological regions in Italy based on a multivariate clustering approach: A first step towards a targeted vector borne disease surveillance
Cited by: 21
Author(s): Carla Ippoliti, Luca Candeloro, Marius Gilbert, Maria Goffredo, Giuseppe Mancini, Gabriele Curci, Serena Falasca, Susanna Tora, Alessio Di Lorenzo, Michela Quaglia, Annamaria Conte
Software Mentions: 6
Published: over 5 years ago
10.26508/lsa.202000974
GATA transcription factors, SOX17 and TFAP2C, drive the human germ-cell specification program
Cited by: 30
Author(s): Yôji Kojima, Chika Yamashiro, Yusuke Murase, Yukihiro Yabuta, Ikuhiro Okamoto, Chizuru Iwatani, Hideaki Tsuchiya, Masataka Nakaya, Tomoyuki Tsukiyama, Tomonori Nakamura, Takuya Yamamoto, Mitinori Saitou
Software Mentions: 6
Published: almost 4 years ago
10.3389/fonc.2020.579868
Hypoxia-Associated Prognostic Markers and Competing Endogenous RNA Co-Expression Networks in Breast Cancer
Cited by: 20
Author(s): Peng Gong, You-Cheng Shao, Shu‐Chun Huang, Yifan Zeng, Xianglin Yuan, Jingjing Xu, Weinan Yin, Lei Wei, Jingwei Zhang
Software Mentions: 6
Published: almost 4 years ago
10.3389/fonc.2021.629633
GMFG Has Potential to Be a Novel Prognostic Marker and Related to Immune Infiltrates in Breast Cancer
Cited by: 5
Author(s): Yan Yang, Xin He, Qianqian Tang, You-Cheng Shao, Wenjing Song, Peng Gong, Yifan Zeng, Shu‐Chun Huang, Jiang-Yao Zhou, Huifang Wan, Lei Wei, Jingwei Zhang
Software Mentions: 6
Published: over 3 years ago
10.1186/s13072-018-0205-1
Consistent inverse correlation between DNA methylation of the first intron and gene expression across tissues and species
Cited by: 243
Author(s): Dafni Anastasiadi, Anna Esteve‐Codina, Francesc Piferrer
Software Mentions: 6
Published: over 6 years ago
10.3389/fonc.2021.650534
High Level of METTL7B Indicates Poor Prognosis of Patients and Is Related to Immunity in Glioma
Cited by: 15
Author(s): Yujia Xiong, Mingxuan Li, Jiwei Bai, Yutao Sheng, Yazhou Zhang
Software Mentions: 6
Published: over 3 years ago
10.3389/fonc.2021.695001
Identification, Verification and Pathway Enrichment Analysis of Prognosis-Related Immune Genes in Patients With Hepatocellular Carcinoma
Cited by: 2
Author(s): Zhipeng Zhu, Mengyu Song, Wenhao Li, Mengying Li, Sihan Chen, Bin Chen
Software Mentions: 5
Published: about 3 years ago
10.1002/cam4.4180
Identification of a novel 10 immune‐related genes signature as a prognostic biomarker panel for gastric cancer
Cited by: 9
Author(s): Tingna Chen, Chaogang Yang, Rongzhang Dou, Bin Xiong
Software Mentions: 5
Published: over 3 years ago
10.7717/peerj.8390
Identification of key biomarkers and immune infiltration in the synovial tissue of osteoarthritis by bioinformatics analysis
Cited by: 46
Author(s): Weisong Cai, Haohuan Li, Yubiao Zhang, Guoge Han
Software Mentions: 5
Published: almost 5 years ago
10.18632/aging.102871
Prognostic value of immune-related genes in the tumor microenvironment of lung adenocarcinoma and lung squamous cell carcinoma
Cited by: 52
Author(s): Yan Qu, Bo Cheng, Ningsheng Shao, Yibin Jia, Qingxu Song, Bingxu Tan, Jianbo Wang
Software Mentions: 5
Published: over 4 years ago
10.1186/s12885-020-06740-5
In silico analysis of the immune microenvironment in bladder cancer
Cited by: 16
Author(s): Ye Zhang, Dehua Ou, Dong-wu Zhuang, Zefeng Zheng, Mingen Lin
Software Mentions: 5
Published: over 4 years ago
10.3389/fmed.2021.716869
An Immune Signature Robustly Predicts Clinical Deterioration for Hepatitis C Virus-Related Early-Stage Cirrhosis Patients
Cited by: 1
Author(s): Cheng Guo, Chunyan Dong, Junjie Zhang, Rui Wang, Zhe Wang, Jie Zhou, Wei Wang, Bing Ji, Ben Ma, Yanli Ge, Zhirong Wang
Software Mentions: 5
Published: over 3 years ago
10.1155/2021/5320941
COL1A1 Is a Potential Prognostic Biomarker and Correlated with Immune Infiltration in Mesothelioma
Cited by: 13
Author(s): Cangang Zhang, Shanshan Liu, Xin Wang, Haiyan Liu, Xiaobo Zhou, Haibo Li
Software Mentions: 5
Published: almost 4 years ago
10.3389/fcell.2021.690542
Predicting Panel of Metabolism and Immune-Related Genes for the Prognosis of Human Ovarian Cancer
Cited by: 7
Author(s): Lingyun Zhang, Wenwen Sun, Weimin Ren, Jinguo Zhang, Guoxiong Xu
Software Mentions: 5
Published: over 3 years ago
10.3389/fmolb.2021.689037
Analyzing and Validating the Prognostic Value of a TNF-Related Signature in Kidney Renal Clear Cell Carcinoma
Cited by: 5
Author(s): Wenhao Zhang, Chang-Jiu Li, Fanding Wu, Ning Li, Yuwei Wang, Yixuan Hu, Tiantian Fang, Yuan Hui, Honghua He
Software Mentions: 5
Published: over 3 years ago
10.1186/s12859-017-1911-6
Reference-guided de novo assembly approach improves genome reconstruction for related species
Cited by: 73
Author(s): Heidi E. L. Lischer, Kentaro Shimizu
Software Mentions: 4
Published: about 7 years ago
10.7717/peerj.11245
Intraspecific variability in the filter mesh size of suspension feeding organisms: the case of invasive Ponto-Caspian corophiids (Crustacea: Amphipoda)
Cited by: 0
Author(s): Péter Borza
Software Mentions: 4
Published: over 3 years ago
10.1186/s12967-021-02991-3
Analysis of immune cell components and immune-related gene expression profiles in peripheral blood of patients with type 1 diabetes mellitus
Cited by: 7
Author(s): Jian Lin, Yuanhua Lu, Bizhou Wang, Peng Jiao, Jie Ma
Software Mentions: 4
Published: over 3 years ago
10.3389/fendo.2021.674616
Tumor Mutation Burden Predicts Relapse in Papillary Thyroid Carcinoma With Changes in Genes and Immune Microenvironment
Cited by: 7
Author(s): Mingming Guo, Zhe Chen, Yayi Li, Sijin Li, Fei Shen, Xiao‐Xiong Gan, Jianhua Feng, Wei Cai, Qingzhi Liu, Bo Xu
Software Mentions: 4
Published: over 3 years ago
10.1186/s12935-021-02090-9
The functions and prognostic values of m6A RNA methylation regulators in thyroid carcinoma
Cited by: 8
Author(s): Zuwei Yu, Shao-Ting Feng, Di Zhang, Xuchen Cao, Yue Yu, Xin Wang
Software Mentions: 4
Published: over 3 years ago
10.1155/2021/5579736
Glycine-Serine-Threonine Metabolic Axis Delays Intervertebral Disc Degeneration through Antioxidant Effects: An Imaging and Metabonomics Study
Cited by: 9
Author(s): Xiaolin Wu, Chang Liu, Shuai Yang, Nana Shen, Yan Wang, Yi Zhu, Zhaoyang Guo, Sihyung Yang, Dongming Xing, Houxi Li, Bohua Chen, Hongfei Xiang
Software Mentions: 4
Published: about 3 years ago
10.3389/fmolb.2021.670893
Low Expression of RILPL2 Predicts Poor Prognosis and Correlates With Immune Infiltration in Endometrial Carcinoma
Cited by: 2
Author(s): Jinhui Liu, Mengting Xu, Zhipeng Wu, Yan Yang, Shuang Yuan, J. Liang, Hongjun Zhu
Software Mentions: 4
Published: over 3 years ago
10.1155/2019/1093815
Exploring the Pathological Mechanism of Bladder Cancer Based on Tumor Mutational Burden Analysis
Cited by: 9
Author(s): Yao Ma, Xiaofei Feng, Wan-Xia Yang, Chongge You
Software Mentions: 4
Published: about 5 years ago
10.1155/2021/4582082
Identification of a Two-m6A RNA Methylation Regulator Risk Signature as an Independent Prognostic Biomarker in Papillary Renal Cell Carcinoma by Bioinformatic Analysis
Cited by: 5
Author(s): Fusheng Yang, Guojiang Zhao, Liyuan Ge, Yimeng Song, Kai Hong, Hongxian Zhang, Cheng Liu, Hong Peng, Lulin Ma
Software Mentions: 4
Published: almost 4 years ago
10.1186/s12938-021-00902-7
An immune-related pseudogene signature to improve prognosis prediction of endometrial carcinoma patients
Cited by: 2
Author(s): Shanshan Tang, Yiyi Zhuge
Software Mentions: 4
Published: over 3 years ago
10.1186/s12885-020-07702-7
The effect of a novel glycolysis-related gene signature on progression, prognosis and immune microenvironment of renal cell carcinoma
Cited by: 35
Author(s): Fangshi Xu, Yawen Guan, Li Xue, Sheng‐Li Huang, Ke Gao, Zhen Yang, Tie Chong
Software Mentions: 4
Published: almost 4 years ago
10.1038/s41598-021-86504-8
Identification and external validation of a prognostic signature associated with DNA repair genes in gastric cancer
Cited by: 5
Author(s): Shimin Chen, Wenbo Liu, Haojun Yu
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pcbi.1006090
DIVERSITY in binding, regulation, and evolution revealed from high-throughput ChIP
Cited by: 12
Author(s): Sneha Mitra, Anushua Biswas, Leelavati Narlikar
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pcbi.1004809
QuIN: A Web Server for Querying and Visualizing Chromatin Interaction Networks
Cited by: 11
Author(s): Asa Thibodeau, Eladio J. Márquez, Oscar Junhong Luo, Yijun Ruan, Francesca Menghi, Dong-Guk Shin, Michael L. Stitzel, Paola Vera-Licona, Duygu Ucar
Software Mentions: 4
Published: over 8 years ago
10.1155/2021/2252832
Immune Mechanism, Gene Module, and Molecular Subtype Identification of Astragalus Membranaceus in the Treatment of Dilated Cardiomyopathy: An Integrated Bioinformatics Study
Cited by: 1
Author(s): Xiaoyang Chen, Hong-Fei Han, Zhenyan He, Xuegong Xu
Software Mentions: 3
Published: about 3 years ago
10.1093/texcom/tgaa038
Shared Numerosity Representations Across Formats and Tasks Revealed with 7 Tesla fMRI: Decoding, Generalization, and Individual Differences in Behavior
Cited by: 7
Author(s): Eric D. Wilkey, Benjamin Conrad, Darren J. Yeo, Gavin R. Price
Software Mentions: 3
Published: almost 5 years ago
10.1136/jmedgenet-2020-107003
Assessing performance of pathogenicity predictors using clinically relevant variant datasets
Cited by: 45
Author(s): Adam C. Gunning, Verity Fryer, James Fasham, Andrew H. Crosby, Sian Ellard, Emma L. Baple, Caroline F. Wright
Software Mentions: 3
Published: about 4 years ago
10.1371/journal.pone.0094724
Leafcutter Bee Nests and Pupae from the Rancho La Brea Tar Pits of Southern California: Implications for Understanding the Paleoenvironment of the Late Pleistocene
Cited by: 4
Author(s): Anna R. Holden, Jonathan B. Koch, Terry Griswold, Diane M. Erwin, Justin Hall
Software Mentions: 3
Published: over 10 years ago
10.3389/fimmu.2021.599512
Profiles of Immune Cell Infiltration in Carotid Artery Atherosclerosis Based on Gene Expression Data
Cited by: 11
Author(s): Long Wang, Beibei Gao, Mingyue Wu, Wei Yuan, Ping Liang, Jinyu Huang
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2020.00647
Identification of a Hypoxia-Associated Signature for Lung Adenocarcinoma
Cited by: 49
Author(s): Zhuomao Mo, Ling Yu, Zhirui Cao, Hao Hu, Shaoju Luo, Shijun Zhang
Software Mentions: 3
Published: over 4 years ago
10.1371/journal.pone.0245524
CKMT1B is a potential prognostic biomarker and associated with immune infiltration in Lower-grade glioma
Cited by: 8
Author(s): Huadi Shi, Yiyun Song, Zeqing Song, Ching‐Wen Huang
Software Mentions: 3
Published: almost 4 years ago
10.3389/fsurg.2021.724792
A Somatic Mutation-Derived LncRNA Signature of Genomic Instability Predicts Prognosis for Patients With Liver Cancer
Cited by: 1
Author(s): Cheng Guo, Jie Zhou, Ben Ma, Rui Wang, Yanli Ge, Zhe Wang, Bing Ji, Wei Wang, Junjie Zhang, Zhirong Wang
Software Mentions: 3
Published: about 3 years ago
10.18632/aging.102931
Using ESTIMATE algorithm to establish an 8-mRNA signature prognosis prediction system and identify immunocyte infiltration-related genes in Pancreatic adenocarcinoma
Cited by: 51
Author(s): Zhaoqing Meng, Dianyun Ren, Kun Zhang, Jingyuan Zhao, Xin Jin, Heshui Wu
Software Mentions: 3
Published: over 4 years ago
10.3390/v7072788
Ultra Deep Sequencing of a Baculovirus Population Reveals Widespread Genomic Variations
Cited by: 58
Author(s): Aurélien Chateigner, Annie Bézier, Carole Labrousse, Davy Jiolle, Valérie Barbe, Elisabeth A. Herniou
Software Mentions: 3
Published: over 9 years ago
10.1172/jci.insight.125377
Keratinocyte growth factor impairs human thymic recovery from lymphopenia
Cited by: 14
Author(s): Alasdair Coles, Laura Azzopardi, Onajite Kousin-Ezewu, Harpreet Kaur Mullay, Sara Thompson, Lorna B. Jarvis, John Q. Davies, Sarah Howlett, Daniel B. Rainbow, Judith Babar, Timothy J Sadler, J William L Brown, Edward Needham, Karen May, Zoya Georgieva, A E Handel, Stefano Maio, Mary E. Deadman, Ioanna A. Rota, G A Holländer, Sarah Dawson, David Jayne, Ruth Seggewiß-Bernhardt, Daniel C. Douek, John D. Isaacs, Joanne L. Jones
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0122146
Genome Wide DNA Methylation Profiles Provide Clues to the Origin and Pathogenesis of Germ Cell Tumors
Cited by: 59
Author(s): Martin A. Rijlaarsdam, David M. J. Tax, Ad J. M. Gillis, Lambert C. J. Dorssers, Devin C. Koestler, Jeroen de Ridder, Leendert H. J. Looijenga
Software Mentions: 3
Published: over 9 years ago