Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/ijms22063251

https://doi.org/10.3390/ijms22063251

Untargeted In Silico Compound Classification—A Novel Metabolomics Method to Assess the Chemodiversity in Bryophytes

Cited by: 11
Author(s): Kristian Peters, Gerd Ulrich Balcke, Niklas Kleinenkuhnen, Hendrik Treutler, Steffen Neumann
Published: over 3 years ago

Software Mentions 31

bioconductor: BiocParallel
Bioconductor facilities for parallel evaluation
Papers that mentioned: 30
bioconductor: mixOmics
Omics Data Integration Project
Papers that mentioned: 375
bioconductor: MSnbase
Base Functions and Classes for Mass Spectrometry and Proteomics
Papers that mentioned: 24
bioconductor: multtest
Resampling-based multiple hypothesis testing
Papers that mentioned: 158
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: cba
Clustering for Business Analytics
Papers that mentioned: 9
cran: circlize
Circular Visualization
Papers that mentioned: 260
cran: DA
Discriminant Analysis for Evolutionary Inference
Papers that mentioned: 1,541
cran: dendextend
Extending 'dendrogram' Functionality in R
Papers that mentioned: 201
cran: doParallel
Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90
cran: dtwclust
Time Series Clustering Along with Optimizations for the Dynamic Time Warping Distance
Papers that mentioned: 11
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: Hmisc
Harrell Miscellaneous
Papers that mentioned: 1,000
cran: lme4
Linear Mixed-Effects Models using 'Eigen' and S4
Papers that mentioned: 9,267
cran: lmerTest
Tests in Linear Mixed Effects Models
Papers that mentioned: 1,865
cran: mltest
Classification Evaluation Metrics
Papers that mentioned: 3
cran: multcomp
Simultaneous Inference in General Parametric Models
Papers that mentioned: 1,558
cran: multiROC
Calculating and Visualizing ROC and PR Curves Across Multi-Class Classifications
Papers that mentioned: 6
cran: phangorn
Phylogenetic Reconstruction and Analysis
Papers that mentioned: 192
cran: plotrix
Various Plotting Functions
Papers that mentioned: 110
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
cran: PRROC
Precision-Recall and ROC Curves for Weighted and Unweighted Data
Papers that mentioned: 35
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
cran: VennDiagram
Generate High-Resolution Venn and Euler Plots
Papers that mentioned: 626
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: cba
Framework for creating command interfaces for control bot
Papers that mentioned: 9
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: mltest

Papers that mentioned: 3
pypi: networking
Low-level networking library
Papers that mentioned: 5