Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: DA
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/DA
Discriminant Analysis for Evolutionary Inference
1 version
Latest release: over 3 years ago
176 downloads last month
Papers Mentioning DA 1,541
10.3390/ijms22063251
Untargeted In Silico Compound Classification—A Novel Metabolomics Method to Assess the Chemodiversity in BryophytesCited by: 11
Author(s): Kristian Peters, Gerd Ulrich Balcke, Niklas Kleinenkuhnen, Hendrik Treutler, Steffen Neumann
Software Mentions: 31
Published: over 3 years ago
10.1371/journal.pcbi.1005752
mixOmics: An R package for ‘omics feature selection and multiple data integrationCited by: 1,902
Author(s): Florian Rohart, Benoît Gautier, Amrit Singh, Kim‐Anh Lê Cao
Software Mentions: 29
Published: almost 7 years ago
10.3389/fchem.2021.734132
The “DOLPHINS” Project: A Low-Cost Real-Time Multivariate Process Control From Large Sensor Arrays Providing Sparse Binary DataCited by: 1
Author(s): Eugenio Alladio, Marcello Baricco, Vincenzo Leogrande, Renato Pagliari, Fabio Pozzi, Paolo Foglio, Marco Vincenti
Software Mentions: 15
Published: about 3 years ago
10.1186/s13072-020-00342-y
ATAC-seq normalization method can significantly affect differential accessibility analysis and interpretationCited by: 39
Author(s): Jake J. Reske, Mike R. Wilson, Ronald L. Chandler
Software Mentions: 14
Published: over 4 years ago
10.1038/s42003-019-0415-5
diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clusteringCited by: 137
Author(s): Lukas M. Weber, Małgorzata Nowicka, Charlotte Soneson, Mark D. Robinson
Software Mentions: 12
Published: over 5 years ago
10.1107/S1600577518016570
Automated data collection and real-time data analysis suite for serial synchrotron crystallographyCited by: 34
Author(s): Shibom Basu, Jakub Wojciech Kaminski, Ezequiel Panepucci, Chia‐Ying Huang, Rangana Warshamanage, Meitian Wang, Justyna Aleksandra Wojdyla
Software Mentions: 11
Published: almost 6 years ago
10.1371/journal.pone.0223909
Effects of MCHM on yeast metabolismCited by: 6
Author(s): Amaury Pupo, Kang‐Mo Ku, Jennifer E. G. Gallagher
Software Mentions: 10
Published: about 5 years ago
10.3390/s21020436
A Methodology for Discriminant Time Series Analysis Applied to Microclimate Monitoring of Fresco PaintingsCited by: 8
Author(s): Sandra Ramírez, Manuel Zarzo, Ángel Perles, Fernando-Juan García-Diego
Software Mentions: 10
Published: almost 4 years ago
10.1101/2020.11.25.20235150
T cell and antibody functional correlates of severe COVID-19Cited by: 8
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 8
Published: almost 4 years ago
10.1093/gigascience/giz004
The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approachesCited by: 103
Author(s): Darshan B. Dhakan, Abhijit Maji, Ashok Sharma, Rituja Saxena, Joby Pulikkan, Tony Grace, Andrés Gómez, Joy Scaria, Katherine R. Amato, Vineet K. Sharma
Software Mentions: 8
Published: almost 6 years ago
10.3390/microorganisms9091939
Human Milk Oligosaccharide-Stimulated Bifidobacterium Species Contribute to Prevent Later Respiratory Tract InfectionsCited by: 18
Author(s): Shaillay Kumar Dogra, François-Pierre Martin, Dominique Donnicola, Monique Julita, Bernard Berger, Norbert Sprenger
Software Mentions: 7
Published: about 3 years ago
10.1007/s12559-020-09773-x
Deep Learning in Mining Biological DataCited by: 197
Author(s): Mufti Mahmud, M. Shamim Kaiser, TM McGinnity, Amir Hussain
Software Mentions: 7
Published: almost 4 years ago
10.1002/1873-3468.13278
The gut microbiome participates in transgenerational inheritance of low‐temperature responses in <i>Drosophila melanogaster</i>Cited by: 23
Author(s): Aman Zare, Anna-Mia Johansson, Edvin Karlsson, Nicolas Delhomme, Per Stenberg
Software Mentions: 7
Published: almost 6 years ago
10.3389/fpls.2019.01581
Expression QTL (eQTLs) Analyses Reveal Candidate Genes Associated With Fruit Flesh Softening Rate in Peach [Prunus persica (L.) Batsch]Cited by: 24
Author(s): Tomás Carrasco-Valenzuela, Claudia Muñoz-Espinoza, Aníbal Riveros, Romina Pedreschi, Pere Arús, Reinaldo Campos-Vargas, Claudio Meneses
Software Mentions: 7
Published: almost 5 years ago
10.3389/fonc.2020.603717
Enhanced Angiogenesis in Salivary Duct Carcinoma Ex-Pleomorphic AdenomaCited by: 6
Author(s): Takayoshi Suzuki, Satoshi Kano, Masanobu Suzuki, Shinichiro Yasukawa, Takatsugu Mizumachi, Nobuko Tsushima, Kanako C. Hatanaka, Yutaka Hatanaka, Yoshihiro Matsuno, Akihiro Homma
Software Mentions: 7
Published: over 3 years ago
10.1038/s41598-021-92927-0
A new CAM6 + DART reanalysis with surface forcing from CAM6 to other CESM modelsCited by: 5
Author(s): K. Raeder, T. J. Hoar, Mohamad El Gharamti, Benjamin K. Johnson, Nancy Collins, Jeffrey L. Anderson, Jeff Steward, Mick Coady
Software Mentions: 7
Published: about 3 years ago
10.1038/s41598-020-62911-1
Analyzing the impact of Mycobacterium tuberculosis infection on primary human macrophages by combined exploratory and targeted metabolomicsCited by: 25
Author(s): Frank Vrieling, Sarantos Kostidis, Herman P. Spaink, Mariëlle C. Haks, Oleg A. Mayboroda, Tom H. M. Ottenhoff, Simone A. Joosten
Software Mentions: 6
Published: over 4 years ago
10.3389/fncom.2014.00139
Diffusion approximation-based simulation of stochastic ion channels: which method to use?Cited by: 8
Author(s): Danilo Pezo, Daniel Soudry, Patricio Orio
Software Mentions: 6
Published: almost 10 years ago
10.1186/s12877-019-1156-5
No effect of 25-hydroxyvitamin D supplementation on the skeletal muscle transcriptome in vitamin D deficient frail older adultsCited by: 11
Author(s): Roland W. J. Hangelbroek, Anouk M.M. Vaes, Mark V. Boekschoten, Lex B. Verdijk, Guido Hooiveld, Luc J. C. van Loon, Lisette C. P. G. M. de Groot, Sander Kersten
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pone.0181033
Transcriptomic and metabolomic profiles of Chinese citrus fly, Bactrocera minax (Diptera: Tephritidae), along with pupal development provide insight into diapause programCited by: 14
Author(s): Jia Wang, Hong-Tao Fan, Ke-Cai Xiong, Ying‐Hong Liu
Software Mentions: 6
Published: over 7 years ago
10.3390/metabo4020433
Influence of Missing Values Substitutes on Multivariate Analysis of Metabolomics DataCited by: 139
Author(s): Piotr S. Gromski, Yun Xu, Helen L. Kotze, Elon Correa, David I. Ellis, Emily G. Armitage, Michael L. Turner, Royston Goodacre
Software Mentions: 6
Published: over 10 years ago
10.1002/ece3.5690
Genetic divergence and phenotypic plasticity contribute to variation in cuticular hydrocarbons in the seaweed fly <i>Coelopa frigida</i>Cited by: 9
Author(s): Emma L. Berdan, Swantje Enge, Göran M. Nylund, Maren Wellenreuther, Gerrit A. Martens, Henrik Pavia
Software Mentions: 6
Published: about 5 years ago
10.1186/s40168-020-00806-z
RapidAIM: a culture- and metaproteomics-based Rapid Assay of Individual Microbiome responses to drugsCited by: 178
Author(s): Leyuan Li, Zhibin Ning, Xu Zhang, Janice Mayne, Kai Cheng, Alain Stintzi, Daniel Figeys
Software Mentions: 6
Published: over 4 years ago
10.3390/s21051734
Convolutional Neural Network for Drowsiness Detection Using EEG SignalsCited by: 45
Author(s): Siwar Chaabene, Bassem Bouaziz, Amal Boudaya, Anita Hökelmann, Achraf Ammar, Lotfi Chaâri
Software Mentions: 6
Published: over 3 years ago
10.7150/thno.47627
Multi-omics study of silicosis reveals the potential therapeutic targets PGD<sub>2</sub> and TXA<sub>2</sub>Cited by: 25
Author(s): Junling Pang, Xianmei Qi, Yunbo Luo, Xiaona Li, Ting Shu, Baicun Li, Meiyue Song, Ying Liu, Wei Dong, Jingyu Chen, Jing Wang, Chen Wang
Software Mentions: 6
Published: almost 4 years ago
10.1172/jci.insight.146242
Comorbid illnesses are associated with altered adaptive immune responses to SARS-CoV-2Cited by: 36
Author(s): Krystle K. Q. Yu, Stephanie Fischinger, Malisa T. Smith, Caroline Atyeo, Deniz Cizmeci, Caitlin R Wolf, Erik D. Layton, Jennifer K. Logue, Melissa S. Aguilar, Kiel Shuey, Carolin Loos, Jingyou Yu, Nicholas Franko, Robert Y. Choi, Anna Wald, Dan H. Barouch, David M. Koelle, Douglas A. Lauffenburger, Helen Y. Chu, Galit Alter, Chetan Seshadri
Software Mentions: 6
Published: over 3 years ago
10.7717/peerj.2740
Harvest year effects on Apulian EVOOs evaluated by<sup>1</sup>H NMR based metabolomicsCited by: 18
Author(s): Chiara Roberta Girelli, Laura Del Coco, Paride Papadia, Sandra Angelica De Pascali, Francesco Paolo Fanizzi
Software Mentions: 6
Published: almost 8 years ago
10.1186/s40168-020-00854-5
Alterations of gut microbiome accelerate multiple myeloma progression by increasing the relative abundances of nitrogen-recycling bacteriaCited by: 52
Author(s): Xingxing Jian, Yinghong Zhu, Jian Ouyang, Yihui Wang, Qian Lei, Jiliang Xia, Yongjun Guan, Jingyu Zhang, Jiaojiao Guo, Yanjuan He, Jinuo Wang, Jian Li, Jingchao Lin, Mingming Su, Guancheng Li, Minghua Wu, Lugui Qiu, Juanjuan Xiang, Lu Xie, Jia Wang, Wen Zhou
Software Mentions: 6
Published: over 4 years ago
10.1186/s40104-021-00584-0
Weaning-associated feed deprivation stress causes microbiota disruptions in a novel mucin-containing in vitro model of the piglet colon (MPigut-IVM)Cited by: 6
Author(s): Raphaële Gresse, Frédérique Chaucheyras‐Durand, Sylvain Denis, Martín Beaumont, Tom Van de Wiele, Evelyne Forano, Stéphanie Blanquet-Diot
Software Mentions: 6
Published: over 3 years ago
10.1038/s41598-021-87886-5
Metabolomics and transcriptomics to decipher molecular mechanisms underlying ectomycorrhizal root colonization of an oak treeCited by: 14
Author(s): Mónica Sebastiana, Albert Gargallo‐Garriga, Jordi Sardans, Míriam Pérez‐Trujillo, Filipa Monteiro, Andreia Figueiredo, Marisa Maia, Rui Nascimento, Marta Sousa Silva, António E. N. Ferreira, Carlos Cordeiro, A. Marques, Lisete Sousa, Rui Malhó, Josep Peñuelas
Software Mentions: 6
Published: over 3 years ago
10.3390/plants10061033
Metabolic Alterations in Pisum sativum Roots during Plant Growth and Arbuscular Mycorrhiza DevelopmentCited by: 13
Author(s): O. Y. Shtark, Roman Puzanskiy, G. S. Avdeeva, Vladislav V. Yemelyanov, А. Л. Шаварда, Daria A. Romanyuk, Marina S. Kliukova, А. А. Кирпичникова, И. А. Тихонович, Vladimir A. Zhukov, М. Ф. Шишова
Software Mentions: 6
Published: over 3 years ago
10.3390/ijms22136641
Transcriptomic and Metabolic Profiling of High-Temperature Treated Storage Roots Reveals the Mechanism of Saccharification in Sweetpotato (Ipomoea batatas (L.) Lam.)Cited by: 5
Author(s): Chen Li, Meng Kou, Mohamed Hamed Arisha, Wei Tang, Meng Ma, Hui Yan, Xin Wang, Xiaoxiao Wang, Yungang Zhang, Yaju Liu, Runfei Gao, Qiang Li
Software Mentions: 6
Published: over 3 years ago
10.1038/sdata.2018.227
Global distribution data for cattle, buffaloes, horses, sheep, goats, pigs, chickens and ducks in 2010Cited by: 298
Author(s): Marius Gilbert, G. Nicolas, Giuseppina Cinardi, Thomas Van Boeckel, Sophie Vanwambeke, William Wint, Timothy P. Robinson
Software Mentions: 6
Published: about 6 years ago
10.1038/s41598-017-08235-z
Discrimination of plant root zone water status in greenhouse production based on phenotyping and machine learning techniquesCited by: 21
Author(s): Doudou Guo, J.A. de Juan, Liu Chang, Zhang Jing-jin, Dan Huang
Software Mentions: 6
Published: about 7 years ago
10.1002/jssc.202000011
Recent applications of chemometrics in one‐ and two‐dimensional chromatographyCited by: 37
Author(s): Tijmen S. Bos, Wouter C. Knol, Stef R.A. Molenaar, Leon E. Niezen, Peter J. Schoenmakers, Govert W. Somsen, Bob W.J. Pirok
Software Mentions: 5
Published: over 4 years ago
10.1007/s00442-021-04977-w
Bank vole alarm pheromone chemistry and effects in the fieldCited by: 1
Author(s): Thorbjörn Sievert, Hannu Ylönen, James D. Blande, Amélie Saunier, Dave van der Hulst, Olga Ylönen, Marko Haapakoski
Software Mentions: 5
Published: over 3 years ago
10.1107/S1600577517014503
<i>DA+</i> data acquisition and analysis software at the Swiss Light Source macromolecular crystallography beamlinesCited by: 54
Author(s): Justyna Aleksandra Wojdyla, Jakub Wojciech Kaminski, Ezequiel Panepucci, Simon Ebner, Xiaoqiang Wang, José Gabadinho, Meitian Wang
Software Mentions: 5
Published: almost 7 years ago
10.1038/s41598-019-51432-1
Increasing oxygen deficiency changes rare and moderately abundant bacterial communities in coastal soft sedimentsCited by: 9
Author(s): Hanna Sinkko, Iina Hepolehto, Christina Lyra, Johanna M. Rinta-Kanto, Anna Villnäs, Joanna Norkko, Alf Norkko, Sari Timonen
Software Mentions: 5
Published: almost 5 years ago
10.3389/fonc.2020.00981
Metabolomic Markers of Colorectal Tumor With Different Clinicopathological FeaturesCited by: 15
Author(s): Zhiping Long, Jianqiu Zhou, Kun Xie, Zhiyong Wu, Huihui Yin, Volontovich Daria, Jingshen Tian, Nannan Zhang, Liangliang Li, Yong Zhao, Wei Fan, Maoqing Wang, Yunfu Cui
Software Mentions: 5
Published: over 4 years ago
10.3389/fphys.2017.00535
The Effects of Weaning Methods on Gut Microbiota Composition and Horse PhysiologyCited by: 52
Author(s): Núria Mach, Aline Foury, Sandra Kittelmann, Fabrice Reigner, Marco Moroldo, María Ballester, Diane Esquerré, Julie Rivière, Guillaume Sallé, Philippe Gérard, Marie‐Pierre Moisan, Léa Lansade
Software Mentions: 5
Published: over 7 years ago
10.3389/fmicb.2015.00024
Resuscitation of the rare biosphere contributes to pulses of ecosystem activityCited by: 150
Author(s): Zachary T. Aanderud, Stuart Jones, Noah Fierer, Jay T. Lennon
Software Mentions: 5
Published: almost 10 years ago
10.1371/journal.pone.0160169
MixMC: A Multivariate Statistical Framework to Gain Insight into Microbial CommunitiesCited by: 125
Author(s): Kim‐Anh Lê Cao, Mary-Ellen Costello, Vanessa Lakis, François Bartolo, Xin-Yi Chua, Rémi Brazeilles, Pascale Rondeau
Software Mentions: 5
Published: about 8 years ago
10.1186/s40168-021-01052-7
Iron status influences non-alcoholic fatty liver disease in obesity through the gut microbiomeCited by: 54
Author(s): Jordi Mayneris‐Perxachs, Marina Cardellini, Lesley Hoyles, Jéssica Latorre, Francesca Davato, José María Moreno-Navarrete, María Arnoriaga-Rodríguez, Matteo Sérino, James Abbott, Richard H. Barton, Josep Puig, Xavier Fernández-Real, Wifredo Ricart, Christopher Tomlinson, Mark Woodbridge, Paolo Gentileschi, Sarah Butcher, Elaine Holmes, Jeremy K. Nicholson, Vicente Pérez‐Brocal, Andrés Moya, Donald Mc Clain, Rémy Burcelin, Marc Dumas, Massimo Federici, José‐Manuel Fernández‐Real
Software Mentions: 5
Published: over 3 years ago
10.1007/s11306-020-01686-y
A comparison of high-throughput plasma NMR protocols for comparative untargeted metabolomicsCited by: 15
Author(s): Nikolaos G. Bliziotis, Udo F. H. Engelke, Ruud L. E. G. Aspers, Jasper Engel, Jaap Deinum, Henri J L M Timmers, Ron A. Wevers, Leo A. J. Kluijtmans
Software Mentions: 5
Published: over 4 years ago
10.1186/s40168-018-0417-4
Type 1 diabetes susceptibility alleles are associated with distinct alterations in the gut microbiotaCited by: 56
Author(s): Jane A. Mullaney, J. Stephens, Mary Ellen Costello, Cai Fong, Brooke E. Geeling, Patrick G. Gavin, Casey M. Wright, Timothy D. Spector, Matthew A. Brown, Emma E. Hamilton‐Williams
Software Mentions: 5
Published: over 6 years ago
10.1128/mSphere.00005-17
Divergent Relationships between Fecal Microbiota and Metabolome following Distinct Antibiotic-Induced DisruptionsCited by: 28
Author(s): Jocelyn M. Choo, Tokuwa Kanno, Nur Masirah M. Zain, Lex E. X. Leong, Guy C. J. Abell, Julie Keeble, Kenneth D. Bruce, A. James Mason, Geraint B. Rogers
Software Mentions: 5
Published: over 7 years ago
10.1186/s40246-020-00291-3
Aldh1l2 knockout mouse metabolomics links the loss of the mitochondrial folate enzyme to deregulation of a lipid metabolism observed in rare human disorderCited by: 9
Author(s): Natalia I. Krupenko, Jaspreet Sharma, Peter Pediaditakis, Kristi L. Helke, Madeline S. Hall, Xiuxia Du, Susan Sumner, Sergey A. Krupenko
Software Mentions: 5
Published: almost 4 years ago
10.1186/s13058-016-0714-4
Intermittent energy restriction induces changes in breast gene expression and systemic metabolismCited by: 33
Author(s): Michelle Harvie, Andrew H. Sims, Mary Pegington, Katherine Spence, Adam Mitchell, Andrew A. Vaughan, J. William Allwood, Yun Xu, Nicholas J. W. Rattray, Royston Goodacre, D. Gareth Evans, Ellen Sullivan Mitchell, Debbie McMullen, Robert B. Clarke, Anthony Howell
Software Mentions: 5
Published: over 8 years ago
10.1093/braincomms/fcab084
Integrative biochemical, proteomics and metabolomics cerebrospinal fluid biomarkers predict clinical conversion to multiple sclerosisCited by: 13
Author(s): Fay Probert, Tianrong Yeo, Yifan Zhou, Megan Sealey, Siddharth Arora, Jacqueline Palace, Timothy D. W. Claridge, Rainer Hillenbrand, Johanna Oechtering, David Leppert, Jens Kühle, D C Anthony
Software Mentions: 5
Published: over 3 years ago
10.3390/metabo9060113
Cerebral Vitamin B5 (D-Pantothenic Acid) Deficiency as a Potential Cause of Metabolic Perturbation and Neurodegeneration in Huntington’s DiseaseCited by: 46
Author(s): Stefano Patassini, Paul Begley, Jiaolong Xu, Stephanie J. Church, Nina Kureishy, Suzanne J. Reid, Henry J. Waldvogel, Richard L.M. Faull, Russell G. Snell, Richard D. Unwin, Garth J. S. Cooper
Software Mentions: 5
Published: over 5 years ago
10.3389/fcimb.2021.646348
Dysbiosis and Implication of the Gut Microbiota in Diabetic RetinopathyCited by: 62
Author(s): Yinhua Huang, Zhijie Wang, Hongjie Ma, Shangli Ji, Zhongping Chen, Zekai Cui, Jiansu Chen, Shibo Tang
Software Mentions: 5
Published: over 3 years ago
10.1186/s12859-018-2149-7
Ensemble outlier detection and gene selection in triple-negative breast cancer dataCited by: 25
Author(s): Marta B. Lopes, André Veríssimo, Eunice Carrasquinha, Sandra Casimiro, Niko Beerenwinkel, Susana Vinga
Software Mentions: 5
Published: over 6 years ago
10.1016/j.gpb.2019.02.003
Denoising Autoencoder, A Deep Learning Algorithm, Aids the Identification of A Novel Molecular Signature of Lung AdenocarcinomaCited by: 12
Author(s): Jun Wang, Xueying Xie, Junchao Shi, Wenjun He, Qi Chen, Liang Chen, Wanjun Gu, Tong Zhou
Software Mentions: 5
Published: over 4 years ago
10.1186/s12263-021-00688-2
An 8-week freeze-dried blueberry supplement impacts immune-related pathways: a randomized, double-blind placebo-controlled trialCited by: 7
Author(s): Michèle Rousseau, Justine Horne, Frédéric Guénard, Juan de Toro‐Martín, Véronique Garneau, Valérie Guay, Michèle Kearney, Geneviève Pilon, Denis Roy, Patrick Couture, Charles Couillard, André Marette
Software Mentions: 5
Published: over 3 years ago
10.1002/1878-0261.12369
Metabolomic profiling of human lung tumor tissues – nucleotide metabolism as a candidate for therapeutic interventions and biomarkersCited by: 37
Author(s): Paula Moreno, Carla Jiménez‐Jiménez, Martín Garrido‐Rodriguez, M. Calderón-Santiago, Susana Molina, Maribel Lara‐Chica, Feliciano Priego‐Capote, A. Salvatierra, Eduardo Muñóz, Marco A. Calzado
Software Mentions: 4
Published: about 6 years ago
10.3390/biology10070658
Targeted Lipidomic Analysis of Aqueous Humor Reveals Signaling Lipid-Mediated Pathways in Primary Open-Angle GlaucomaCited by: 7
Author(s): Nadezhda V. Azbukina, Dmitry V. Chistyakov, Sergei V. Goriainov, В. И. Котелин, Е. В. Федосеева, S. Yu. Petrov, Marina G. Sergeeva, Elena N. Iomdina, Evgeni Yu Zernii
Software Mentions: 4
Published: over 3 years ago
10.3390/molecules24142562
Assessing Geographical Origin of Gentiana Rigescens Using Untargeted Chromatographic Fingerprint, Data Fusion and ChemometricsCited by: 13
Author(s): Tao Shen, Hong Yu, Yuanzhong Wang
Software Mentions: 4
Published: over 5 years ago
10.3389/fmicb.2018.03203
Bark and Grape Microbiome of Vitis vinifera: Influence of Geographic Patterns and Agronomic Management on Bacterial DiversityCited by: 61
Author(s): Nicola Vitulo, Wilson José Fernandes Lemos, Matteo Calgaro, Marco Confalone, Giovanna E. Felis, Giacomo Zapparoli, Tiziana Nardi
Software Mentions: 4
Published: almost 6 years ago
10.18632/aging.203046
Aging-related markers in rat urine revealed by dynamic metabolic profiling using machine learningCited by: 4
Author(s): Dan Shi, Qilong Tan, Jingqi Ruan, Zhen Tian, Xinyue Wang, Jinxiao Liu, Xin Liu, Zhipeng Liu, Yuntao Zhang, Chongde Sun, Yucun Niu
Software Mentions: 4
Published: over 3 years ago
10.3390/ani11041024
Effects of Dietary Protein Level on the Gut Microbiome and Nutrient Metabolism in Tilapia (Oreochromis niloticus)Cited by: 20
Author(s): Changgeng Yang, Ming Jiang, Xin Lü, Wen Huang
Software Mentions: 4
Published: over 3 years ago
10.1038/s42003-019-0521-4
Multi-omic analysis in transgenic mice implicates omega-6/omega-3 fatty acid imbalance as a risk factor for chronic diseaseCited by: 49
Author(s): Kanakaraju Kaliannan, Xiangyong Li, Bin Wang, Qian Pan, Chih-Yu Chen, Lei Hao, Shanfu Xie, Jing Kang
Software Mentions: 4
Published: over 5 years ago
10.1002/ece3.7523
A deep dive into fat: Investigating blubber lipidomic fingerprint of killer whales and humpback whales in northern NorwayCited by: 9
Author(s): Pierre Bories, Audun H. Rikardsen, P.E.G. Leonards, Aaron T. Fisk, Sabrina Tartu, Emma F. Vogel, Jenny Bytingsvik, Pierre Blévin
Software Mentions: 4
Published: over 3 years ago
10.3390/cells10010185
Beneficial Effects of Akkermansia muciniphila Are Not Associated with Major Changes in the Circulating Endocannabinoidome but Linked to Higher Mono-Palmitoyl-Glycerol Levels as New PPARα AgonistsCited by: 39
Author(s): Clara Depommier, Rosa Maria Vitale, Fabio Arturo Iannotti, Cristoforo Silvestri, Nicolas Flamand, Céline Druart, Amandine Everard, Rudy Pelicaen, Dominique Maiter, Jean‐Paul Thissen, Audrey Loumaye, Michel P. Hermans, Nathalie M. Delzenne, Willem M. de Vos, Vincenzo Di Marzo, Patrice D. Cani
Software Mentions: 4
Published: almost 4 years ago
10.1371/journal.pone.0160001
Molecular and Morphological Inference of Three Cryptic Species within the Merodon aureus Species Group (Diptera: Syrphidae)Cited by: 31
Author(s): Ljiljana Šašić, Jelena Ačanski, Ante Vujić, Gunilla Ståhls, Snežana Radenković, Dubravka Milić, Dragana Obreht Vidaković, Dan Mo
Software Mentions: 4
Published: about 8 years ago
10.1002/advs.201902862
Gut Microbial Signatures Can Discriminate Unipolar from Bipolar DepressionCited by: 75
Author(s): Peng Zheng, Jian Yang, Yifan Li, Jing Wu, Weiwei Liang, Bangmin Yin, Xunmin Tan, Yu Huang, Tingjia Chai, Hanping Zhang, Jiajia Duan, Jingjing Zhou, Zuoli Sun, Chen Xu, Subhi Marwari, Jianbo Lai, Tingting Huang, Yanli Du, Peifen Zhang, Seth W. Perry, Ma‐Li Wong, Júlio Licinio, Shaohua Hu, Peng Xie, Gang Wang
Software Mentions: 4
Published: over 4 years ago
10.1371/journal.pone.0124467
A Four-Compartment Metabolomics Analysis of the Liver, Muscle, Serum, and Urine Response to Polytrauma with Hemorrhagic Shock following Carbohydrate PrefeedCited by: 15
Author(s): Nancy E. Witowski, Elizabeth R. Lusczek, Charles Determan, Daniel R. Lexcen, Kristine E. Mulier, Beverly Gaul Ostrowski, Greg J. Beilman
Software Mentions: 4
Published: over 9 years ago
10.3390/life11060578
Comparative Analysis of Flavonoid Metabolites in Foxtail Millet (Setaria italica) with Different Eating QualityCited by: 8
Author(s): Yakun Zhang, Jianhua Gao, Qianru Qie, Yulu Yang, Siyu Hou, Xingchun Wang, Xukai Li, Yuanhuai Han
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0223031
Lipidomics analysis of juveniles’ blue mussels (Mytilus edulis L. 1758), a key economic and ecological speciesCited by: 13
Author(s): Vincenzo Alessandro Laudicella, Christine Beveridge, Stefano Carboni, Sofia C. Franco, Mary K. Doherty, Nina Long, Elaine Mitchell, Michele S. Stanley, Phillip D. Whitfield, Adam D. Hughes
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-020-65137-3
Morphological, genotypic and metabolomic signatures confirm interfamilial hybridization between the ubiquitous kelps Macrocystis (Arthrothamnaceae) and Lessonia (Lessoniaceae)Cited by: 9
Author(s): Pedro Murúa, Ru Angelie Edrada-Ebel, Liliana Muñoz, Sylvia Soldatou, Nathalie Legrave, Dieter G. Müller, David J. Patiño, Pieter van West, Frithjof C. Küpper, R. Westermeier, Rainer Ebel, Akira F. Peters
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-021-95455-z
Evaluation of two highly effective lipid-lowering therapies in subjects with acute myocardial infarctionCited by: 6
Author(s): Aline Klassen, Andréa Tedesco Faccio, Carolina R. C. Picossi, Priscilla Bento Matos Cruz Derogis, Carlos Eduardo dos Santos Ferreira, Aline Soriano Lopes, Alessandra Sussulini, Elisa Castañeda Santa Cruz, Rafaela Tudela Bastos, Stefanie Caroline Fontoura, Antônio Martins Figueiredo Neto, Marina Franco Maggi Tavares, Maria Cristina Izar, Francisco Antônio Helfenstein Fonseca
Software Mentions: 4
Published: about 3 years ago
10.1172/jci.insight.124819
A randomized 3-way crossover study indicates that high-protein feeding induces de novo lipogenesis in healthy humansCited by: 28
Author(s): Evelina Charidemou, Tom Ashmore, Xuefei Li, Ben D. McNally, James A. West, Sonia Liggi, Matthew Harvey, Elise Orford, Julian L. Griffin
Software Mentions: 4
Published: over 5 years ago
10.1111/gcb.13357
Biodiversity in marine invertebrate responses to acute warming revealed by a comparative multi‐omics approachCited by: 75
Author(s): Melody S. Clark, Ulf Sommer, Jaspreet K Sihra, Michael A. S. Thorne, Simon A. Morley, Michelle King, Mark R. Viant
Software Mentions: 4
Published: over 8 years ago
10.1038/hortres.2017.17
A community resource for exploring and utilizing genetic diversity in the USDA pea single plant plus collectionCited by: 34
Author(s): William L. Holdsworth, Élodie Gazave, Cheng Peng, James R. Myers, Michael A. Gore, Clarice J. Coyne, Rebecca J. McGee, Michael Mazourek
Software Mentions: 4
Published: over 7 years ago
10.3390/ph14070662
Insulin-Mimic Components in Acer truncatum Leaves: Bio-Guided Isolation, Annual Variance Profiling and Regulating Pathway Investigated by OmicsCited by: 11
Author(s): Xiaoyue Zhang, Yihan Liu, Dazhi Liu, Jianing Xu, Qiang Zhang
Software Mentions: 4
Published: over 3 years ago
10.18632/aging.101170
Metabolomic signature associated with reproduction-regulated aging in Caenorhabditis elegansCited by: 39
Author(s): Qin-Li Wan, Xiaohuo Shi, Jiangxin Liu, Aijun Ding, Yuan-Zhu Pu, Zhigang Li, Gui-Sheng Wu, Huai‐Rong Luo
Software Mentions: 4
Published: over 7 years ago
10.3389/fpls.2021.626301
Seed Priming With Protein Hydrolysates Improves Arabidopsis Growth and Stress Tolerance to Abiotic StressesCited by: 25
Author(s): Mirella Sorrentino, Nuria De Diego, Lydia Ugena, Lukáš Spíchal, Luigi Lucini, Begoña Miras-Moreno, Leilei Zhang, Youssef Rouphael, G. Colla, Klára Panzarová
Software Mentions: 4
Published: over 3 years ago
10.3390/ijms21124470
Differences between Well-Differentiated Neuroendocrine Tumors and Ductal Adenocarcinomas of the Pancreas Assessed by Multi-Omics ProfilingCited by: 8
Author(s): Teresa Starzyńska, Jakub Karczmarski, Agnieszka Paziewska, Maria Kulecka, Katarzyna Kuśnierz, Natalia Żeber‐Lubecka, Filip Ambrożkiewicz, Michał Mikula, Beata Kos‐Kudła, Jerzy Ostrowski
Software Mentions: 4
Published: over 4 years ago
10.1155/2021/5579736
Glycine-Serine-Threonine Metabolic Axis Delays Intervertebral Disc Degeneration through Antioxidant Effects: An Imaging and Metabonomics StudyCited by: 9
Author(s): Xiaolin Wu, Chang Liu, Shuai Yang, Nana Shen, Yan Wang, Yi Zhu, Zhaoyang Guo, Sihyung Yang, Dongming Xing, Houxi Li, Bohua Chen, Hongfei Xiang
Software Mentions: 4
Published: about 3 years ago
10.18632/oncotarget.26022
Metabolite quantification of faecal extracts from colorectal cancer patients and healthy controlsCited by: 25
Author(s): Gwénaëlle Le Gall, Kiran Guttula, Lee Kellingray, Adrian Tett, Rogier ten Hoopen, E. Kate Kemsley, George M. Savva, Ashraf E.K. Ibrahim, Arjan Narbad
Software Mentions: 4
Published: about 6 years ago
10.3390/nu12123858
Effects of Daily Raspberry Consumption on Immune-Metabolic Health in Subjects at Risk of Metabolic Syndrome: A Randomized Controlled TrialCited by: 18
Author(s): Maximilien Franck, Juan de Toro‐Martín, Véronique Garneau, Valérie Guay, Michèle Kearney, Geneviève Pilon, Denis Roy, Patrick Couture, Charles Couillard, André Marette, Marie‐Claude Vohl
Software Mentions: 4
Published: almost 4 years ago
10.1002/jsp2.1099
Protocol for parallel proteomic and metabolomic analysis of mouse intervertebral disc tissuesCited by: 4
Author(s): Matthew A Veras, Yong Jin Lim, Miljan Kuljanin, Gilles Lajoie, Bradley L. Urquhart, Cheryle A. Séguin
Software Mentions: 4
Published: over 4 years ago
10.1038/s41598-018-29971-w
Addition of dairy lipids and probiotic Lactobacillus fermentum in infant formula programs gut microbiota and entero-insular axis in adult minipigsCited by: 28
Author(s): Marion Lemaire, Samir Dou, Armelle Cahu, Michèle Formal, Laurence Le Normand, Véronique Rome, Isabelle Nogret, Stéphanie Ferret‐Bernard, Moez Rhimi, Isabelle Cuinet, Cécile Canlet, Marie Tremblay-Franco, Pascale Le Ruyet, Charlotte Baudry, Philippe Gérard, Isabelle Le Huërou‐Luron, Sophie Blat
Software Mentions: 4
Published: over 6 years ago
10.1099/jmm.0.028126-0
Microbial community and metabolomic comparison of irritable bowel syndrome faecesCited by: 190
Author(s): Kannan Ponnusamy, Jung Ran Choi, Jiyoung Kim, Sun-Young Lee, Choong Hwan Lee
Software Mentions: 3
Published: over 13 years ago
10.3390/ijms22168751
Integrated Metabolomic and Transcriptomic Analysis Reveals the Flavonoid Regulatory Network by Eutrema EsMYB90Cited by: 8
Author(s): Yuting Qi, Chuanshun Li, Chonghao Duan, Caihong Gu, Quan Zhang
Software Mentions: 3
Published: about 3 years ago
10.3390/ijms161226133
A Combined Metabolomic and Proteomic Analysis of Gestational Diabetes MellitusCited by: 24
Author(s): Joanna Hajduk, Agnieszka Klupczynska, Paweł Dereziński, Jan Matysiak, Piotr Kokot, Dorota Nowak, Marzena Gajęcka, Ewa Nowak‐Markwitz, Zenon J. Kokot
Software Mentions: 3
Published: almost 9 years ago
10.1038/srep22525
Integrated metabolomics and metagenomics analysis of plasma and urine identified microbial metabolites associated with coronary heart diseaseCited by: 103
Author(s): Qiang Feng, Zhipeng Liu, Shilong Zhong, Ruijun Li, Huihua Xia, Zhuye Jie, Bo Wen, Xiaomin Chen, Wei Yan, Yanqun Fan, Zhenyu Guo, Nan Meng, Jiyan Chen, Yu Xin, Zhiwei Zhang, Karsten Kristiansen, Jun Wang, Xun Xu, Kunlun He, Guanglei Li
Software Mentions: 3
Published: over 8 years ago
10.1038/s41598-018-27964-3
Gut microbiota components are associated with fixed airway obstruction in asthmatic patients living in the tropicsCited by: 14
Author(s): Emiro Buendía, Josefina Zakzuk, Homero San‐Juan‐Vergara, Eduardo Zurek, Nadim J. Ajami, Luis Caraballo
Software Mentions: 3
Published: over 6 years ago
10.1038/srep17141
Preterm gut microbiota and metabolome following discharge from intensive careCited by: 36
Author(s): Christopher J. Stewart, Tom Skeath, Andrew Nelson, Sara Johansson Fernstad, Emma C. L. Marrs, John D. Perry, Stephen Cummings, Janet Berrington, Nicholas D. Embleton
Software Mentions: 3
Published: almost 9 years ago
10.3390/nu11020274
Metabolomic Salivary Signature of Pediatric Obesity Related Liver Disease and Metabolic SyndromeCited by: 35
Author(s): Jacopo Troisi, F. Belmonte, A. Bisogno, Luca Pierri, Angelo Colucci, Giovanni Scala, Pierpaolo Cavallo, Claudia Mandato, Antonella Di Nuzzi, Laura Di Michele, Anna Pia Delli Bovi, Salvatore Guercio Nuzio, Pietro Vajro
Software Mentions: 3
Published: almost 6 years ago
10.3390/nu9050485
Urinary Metabolomics in Pediatric Obesity and NAFLD Identifies Metabolic Pathways/Metabolites Related to Dietary Habits and Gut-Liver Axis PerturbationsCited by: 53
Author(s): Jacopo Troisi, Luca Pierri, Annamaria Landolfi, F. Marcianò, A. Bisogno, F. Belmonte, Carmen Palladino, Salvatore Guercio Nuzio, Pietro Campiglia, Pietro Vajro
Software Mentions: 3
Published: over 7 years ago
10.3390/ijms20020401
Rootstock-Mediated Effects on Cabernet Sauvignon Performance: Vine Growth, Berry Ripening, Flavonoids, and Aromatic ProfilesCited by: 27
Author(s): Yu Wang, Wei-Kai Chen, Xiaotong Gao, Lei He, Xiaohui Yang, Fei He, Chang‐Qing Duan, Jun Wang
Software Mentions: 3
Published: almost 6 years ago
10.3390/ijms21041546
The Hypoxic Proteome and Metabolome of Barley (Hordeum vulgare L.) with and without Phytoglobin PrimingCited by: 12
Author(s): Olga Andrzejczak, Jesper Foged Havelund, Weiqing Wang, Sergey I. Kovalchuk, Christina E Hagensen, Harald Hasler-Sheetal, Ole N. Jensen, Adelina Rogowska-Wrzesińska, Ian Max Møller, Kim H. Hebelstrup
Software Mentions: 3
Published: over 4 years ago
10.1038/s41598-017-09431-7
Biogeography shaped the metabolome of the genus Espeletia: a phytochemical perspective on an Andean adaptive radiationCited by: 25
Author(s): Guillermo F. Padilla-González, Mauricio Diazgranados, Fernando Batista Da Costa
Software Mentions: 3
Published: about 7 years ago
10.1038/s41598-018-31264-1
Differentiation and comparison of Wolfiporia cocos raw materials based on multi-spectral information fusion and chemometric methodsCited by: 19
Author(s): Yan Li, Yuanzhong Wang
Software Mentions: 3
Published: about 6 years ago
10.1038/s41598-018-19630-5
A procession of metabolic alterations accompanying muscle senescence in Manduca sextaCited by: 9
Author(s): Bernard Wone, Jason M. Kinchen, Elana R. Kaup
Software Mentions: 3
Published: almost 7 years ago
10.1038/s41598-017-07015-z
Biochemical profiling of diabetes disease progression by multivariate vibrational microspectroscopy of the pancreasCited by: 9
Author(s): Christoffer Nord, Maria Eriksson, Andrea Dicker, Anna Eriksson, Eivind Grong, Erwin Ilegems, Ronald Mårvik, Bård Kulseng, Per Olof Berggren, András Gorzsás, Ulf Ahlgren
Software Mentions: 3
Published: over 7 years ago
10.1038/s41598-017-12254-1
Large-scale Metabolomic Analysis Reveals Potential Biomarkers for Early Stage Coronary AtherosclerosisCited by: 31
Author(s): Xueqin Gao, Chaofu Ke, Haixia Liu, Wei Liu, Kang Li, Bo Yu, Meng Sun
Software Mentions: 3
Published: about 7 years ago
10.1038/s41598-020-57468-y
Evidence of altered mucosa-associated and fecal microbiota composition in patients with Irritable Bowel SyndromeCited by: 33
Author(s): Johanna Sundin, Imran Aziz, Sofia Nordlander, Annikka Polster, Yue Hu, Luisa W. Hugerth, Alexandra Pennhag, Lars Engstrand, Hans Törnblom, Magnus Simrén, Lena Öhman
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41598-019-51489-y
NMR-based metabolic profiling and comparison of Japanese persimmon cultivarsCited by: 9
Author(s): Shinsei Ryu, Tsuyoshi Muramatsu, Kazuo Furihata, Feifei Wei, Masanori Koda, Takuya Miyakawa, Masaru Tanokura
Software Mentions: 3
Published: about 5 years ago
10.1038/s41598-019-57257-2
Postprandial Metabolism is Impaired in Overweight Normoglycemic Young Adults without Family History of DiabetesCited by: 20
Author(s): Ashok Kumar, Gopika Satheesh, G. Vijayakumar, Mahesh Chandran, Priya R. Prabhu, Leena Simon, V. Raman Kutty, Kartha Cc, Abdul Jaleel
Software Mentions: 3
Published: almost 5 years ago