Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: PRROC
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/PRROC
Precision-Recall and ROC Curves for Weighted and Unweighted Data
4 versions
Latest release: over 6 years ago
10 dependent packages
24,830 downloads last month
Papers Mentioning PRROC 35
10.3390/ijms22063251
Untargeted In Silico Compound Classification—A Novel Metabolomics Method to Assess the Chemodiversity in BryophytesCited by: 11
Author(s): Kristian Peters, Gerd Ulrich Balcke, Niklas Kleinenkuhnen, Hendrik Treutler, Steffen Neumann
Software Mentions: 31
Published: over 3 years ago
10.7717/peerj.8059
Exploring snake occurrence records: Spatial biases and marginal gains from accessible social mediaCited by: 9
Author(s): Benjamin Michael Marshall, Colin Thomas Strine
Software Mentions: 24
Published: almost 5 years ago
10.7554/eLife.53392
ZCWPW1 is recruited to recombination hotspots by PRDM9 and is essential for meiotic double strand break repairCited by: 23
Author(s): Daniel Wells, Emmanuelle Bitoun, Daniela Moralli, Gang Zhang, Anjali Gupta Hinch, Julia Jankowska, Peter Donnelly, Catherine Green, Simon Myers
Software Mentions: 14
Published: over 4 years ago
10.3389/fgene.2021.652189
Using Network-Based Machine Learning to Predict Transcription Factors Involved in Drought ResistanceCited by: 11
Author(s): Chirag Gupta, Venkategowda Ramegowda, Supratim Basu, Andy Pereira
Software Mentions: 13
Published: over 3 years ago
10.1002/sim.8116
Correlation‐adjusted regression survival scores for high‐dimensional variable selectionCited by: 10
Author(s): Thomas Welchowski, Verena Zuber, Matthias Schmid
Software Mentions: 11
Published: almost 6 years ago
10.3389/fphys.2021.714195
Development and Validation of a Prediction Model for Elevated Arterial Stiffness in Chinese Patients With Diabetes Using Machine LearningCited by: 5
Author(s): Qingqing Li, Wenhui Xie, Liping Li, Lijing Wang, Qinyi You, Lu Chen, Jing Li, Yilang Ke, Jun Fang, Libin Liu, Huashan Hong
Software Mentions: 11
Published: over 3 years ago
10.1186/s12916-020-01595-w
Serum metabolite profiles are associated with the presence of advanced liver fibrosis in Chinese patients with chronic hepatitis B viral infectionCited by: 30
Author(s): Guoxiang Xie, Xiaoning Wang, Runmin Wei, Jingye Wang, Aihua Zhao, Tianlu Chen, Yixing Wang, Hua Zhang, Zhun Xiao, Xin-Zhu Liu, Youping Deng, Linda L. Wong, Cynthia Rajani, Sandi A. Kwee, Hua Bian, Xin Gao, Ping Liu, Jia Wang
Software Mentions: 10
Published: over 4 years ago
10.1017/S0950268820000758
Development and external-validation of a nomogram for predicting the survival of hospitalised HIV/AIDS patients based on a large study cohort in western ChinaCited by: 5
Author(s): Zongxiang Yuan, Bo Zhou, Sirun Meng, Jie Jiang, Shenghong Huang, Xiang Lu, Nianning Wu, Zhongkui Xie, Jianning Deng, X. Chen, J. Liu, J. Zhang, Fengyao Wu, Hao Liang, L. Ye
Software Mentions: 8
Published: almost 5 years ago
10.3389/fmolb.2021.675198
A High Epigenetic Risk Score Shapes the Non-Inflamed Tumor Microenvironment in Breast CancerCited by: 1
Author(s): Dong Zhang, Yingnan Wang, Qifeng Yang
Software Mentions: 8
Published: over 3 years ago
10.1093/bioinformatics/btz698
scds: computational annotation of doublets in single-cell RNA sequencing dataCited by: 114
Author(s): Abha Bais, Dennis Kostka
Software Mentions: 7
Published: about 5 years ago
10.1186/s12870-018-1329-y
Distinct tissue-specific transcriptional regulation revealed by gene regulatory networks in maizeCited by: 39
Author(s): Ji Huang, Jue-Fei Zheng, Hui Yuan, Karen M. McGinnis
Software Mentions: 5
Published: over 6 years ago
10.1038/s41598-018-33681-8
Pathogen Identification Direct From Polymicrobial Specimens Using Membrane GlycolipidsCited by: 17
Author(s): William E. Fondrie, Tao Liang, Benjamin L. Oyler, Lisa M. Leung, Robert K. Ernst, Dudley K. Strickland, David R. Goodlett
Software Mentions: 5
Published: about 6 years ago
10.1371/journal.pcbi.1008735
From heterogeneous healthcare data to disease-specific biomarker networks: A hierarchical Bayesian network approachCited by: 9
Author(s): Ann‐Kristin Becker, Marcus Dörr, Stephan B. Felix, Fabian Frost, Hans J. Grabe, Markus M. Lerch, Matthias Nauck, Uwe Völker, Henry Völzke, Lars Kaderali
Software Mentions: 5
Published: almost 4 years ago
10.1371/journal.pone.0237412
The impact of different negative training data on regulatory sequence predictionsCited by: 3
Author(s): Louisa-Marie Krützfeldt, Max Schubach, Martin Kircher
Software Mentions: 5
Published: almost 4 years ago
10.3389/fgene.2021.670749
Multi-Omics Marker Analysis Enables Early Prediction of Breast Tumor ProgressionCited by: 5
Author(s): Haifeng Xu, Tonje G. Lien, Helga Bergholtz, Thomas Fleischer, Lounes Djerroudi, Anne Vincent‐Salomon, Thérese Sørlie, Tero Aittokallio
Software Mentions: 5
Published: over 3 years ago
10.3390/bioengineering8060085
Supervised Analysis for Phenotype Identification: The Case of Heart Failure Ejection Fraction ClassCited by: 2
Author(s): Cristina López, Jose Luis Holgado, Raquel Cortés, Inma Sauri, Antonio Fernandez, José Miguel Calderón, Julio Núñez, Josep Redón
Software Mentions: 5
Published: over 3 years ago
10.1186/s13326-018-0189-6
Using predicate and provenance information from a knowledge graph for drug efficacy screeningCited by: 16
Author(s): Wytze J. Vlietstra, Rein Vos, Anneke M. Sijbers, Erik M. van Mulligen, Jan A. Kors
Software Mentions: 5
Published: about 6 years ago
10.1098/rsob.200052
Bioinformatical dissection of fission yeast DNA replication originsCited by: 1
Author(s): Koji Masuda, Claire Renard-Guillet, Katsuhiko Shirahige, Takashi Sutani
Software Mentions: 4
Published: over 4 years ago
10.1093/bioinformatics/btw570
Precrec: fast and accurate precision–recall and ROC curve calculations in RCited by: 145
Author(s): Takaya Saito, Marc Rehmsmeier
Software Mentions: 4
Published: about 8 years ago
10.26508/lsa.201800098
An integrative machine learning approach for prediction of toxicity-related drug safetyCited by: 38
Author(s): Artem Lysenko, Alok Sharma, Keith A. Boroevich, Tatsuhiko Tsunoda
Software Mentions: 4
Published: almost 6 years ago
10.3390/cancers13030430
Effective Prediction of Prostate Cancer Recurrence through the IQGAP1 NetworkCited by: 4
Author(s): Yan Gu, Xiaozeng Lin, Anil Kapoor, Taosha Li, Pierre Major, Damu Tang
Software Mentions: 4
Published: almost 4 years ago
10.3390/cancers13174483
Prognostic and Therapeutic Potential of the OIP5 Network in Papillary Renal Cell CarcinomaCited by: 6
Author(s): Mathilda Jing Chow, Yan Gu, Lizhi He, Xiaozeng Lin, Ying Dong, Wenjuan Mei, Anil Kapoor, Damu Tang
Software Mentions: 4
Published: about 3 years ago
10.3390/jcm9061668
Using Machine Learning to Predict ICU Transfer in Hospitalized COVID-19 PatientsCited by: 129
Author(s): Fu-Yuan Cheng, Himanshu Joshi, Pranai Tandon, Robert Freeman, David L. Reich, Madhu Mazumdar, Roopa Kohli‐Seth, Matthew A. Levin, Prem Timsina, Arash Kia
Software Mentions: 3
Published: over 4 years ago
10.7717/peerj.6304
Prioritizing bona fide bacterial small RNAs with machine learning classifiersCited by: 6
Author(s): Erik JJ Eppenhof, Lourdes Peña‐Castillo
Software Mentions: 3
Published: almost 6 years ago
10.1016/j.ijcha.2021.100716
Update and, internal and temporal-validation of the FRANCE-2 and ACC-TAVI early-mortality prediction models for Transcatheter aortic Valve Implantation (TAVI) using data from the Netherlands heart registration (NHR)Cited by: 5
Author(s): Hatem Al-Farra, Bas A.J.M. de Mol, Anita C.J. Ravelli, W. J. P. P. ter Burg, Saskia Houterman, José P.S. Henriques, Ameen Abu‐Hanna
Software Mentions: 3
Published: almost 4 years ago
10.1186/s13062-016-0151-4
modPDZpep: a web resource for structure based analysis of human PDZ-mediated interaction networksCited by: 1
Author(s): Neetu Sain, Debasisa Mohanty
Software Mentions: 3
Published: about 8 years ago
10.12688/f1000research.16200.2
Predicting transcription factor binding using ensemble random forest modelsCited by: 7
Author(s): Fatemeh Behjati Ardakani, Florian Schmidt, Marcel H. Schulz
Software Mentions: 3
Published: about 5 years ago
10.1186/s13059-018-1534-x
CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parametersCited by: 94
Author(s): Ferhat Alkan, Anne Wenzel, Christian Anthon, Jakob Hull Havgaard, Jan Gorodkin
Software Mentions: 2
Published: about 6 years ago
10.1038/s41598-019-52585-9
A Frailty Index based on clinical data to quantify mortality risk in dogsCited by: 27
Author(s): Tommaso Banzato, Giovanni Franzo, Roberta Di Maggio, Elisa Nicoletto, Silvia Burti, Matteo Cesari, Marco Canevelli
Software Mentions: 2
Published: about 5 years ago
10.1038/s41598-020-72404-w
Identification of pathogenic missense mutations using protein stability predictorsCited by: 51
Author(s): Lukas Gerasimavicius, Xin Liu, Joseph A. Marsh
Software Mentions: 2
Published: about 4 years ago
10.3390/ijms19113609
Causal Transcription Regulatory Network Inference Using Enhancer Activity as a Causal AnchorCited by: 4
Author(s): Deepti Vipin, Lingfei Wang, Guillaume Devailly, Tom Michoel, Anagha Joshi
Software Mentions: 2
Published: about 6 years ago
10.1186/s12936-020-3111-5
A panel of recombinant proteins from human-infective Plasmodium species for serological surveillanceCited by: 9
Author(s): Nicole Müller-Sienerth, Jarrod Shilts, Khamisah Abdul Kadir, Victor Yman, Manijeh Vafa Homann, Muhammad Asghar, Billy Ngasala, Balbir Singh, Anna Färnert, Gavin J. Wright
Software Mentions: 1
Published: almost 5 years ago
10.1093/bioinformatics/bty674
On the problem of confounders in modeling gene expressionCited by: 10
Author(s): Florian Schmidt, Marcel H. Schulz
Software Mentions: 1
Published: over 6 years ago
10.3390/ph14010004
Improved Detection Criteria for Detecting Drug-Drug Interaction Signals Using the Proportional Reporting RatioCited by: 6
Author(s): Yoshihiro Noguchi, Keisuke Aoyama, Satoaki Kubo, Tomoya Tachi, Hitomi Teramachi
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41398-019-0485-7
Alzheimer’s disease polygenic risk score as a predictor of conversion from mild-cognitive impairmentCited by: 61
Author(s): Sultan Chaudhury, Keeley Brookes, Tulsi Patel, Abigail Fallows, Tamar Guetta-Baranés, James Turton, Rita Guerreiro, José Brás, John Hardy, Paul T. Francis, Rebecca Croucher, Clive Holmes, Kevin Morgan
Software Mentions: 1
Published: over 5 years ago