cran: PRROC | Projects | Ecosyste.ms: Papers

10.3390/ijms22063251

Untargeted In Silico Compound Classification—A Novel Metabolomics Method to Assess the Chemodiversity in Bryophytes
Cited by: 11
Author(s): Kristian Peters, Gerd Ulrich Balcke, Niklas Kleinenkuhnen, Hendrik Treutler, Steffen Neumann
Software Mentions: 31
Published: over 3 years ago

10.7717/peerj.8059

Exploring snake occurrence records: Spatial biases and marginal gains from accessible social media
Cited by: 9
Author(s): Benjamin Michael Marshall, Colin Thomas Strine
Software Mentions: 24
Published: almost 5 years ago

10.7554/eLife.53392

ZCWPW1 is recruited to recombination hotspots by PRDM9 and is essential for meiotic double strand break repair
Cited by: 23
Author(s): Daniel Wells, Emmanuelle Bitoun, Daniela Moralli, Gang Zhang, Anjali Gupta Hinch, Julia Jankowska, Peter Donnelly, Catherine Green, Simon Myers
Software Mentions: 14
Published: about 4 years ago

10.3389/fgene.2021.652189

Using Network-Based Machine Learning to Predict Transcription Factors Involved in Drought Resistance
Cited by: 11
Author(s): Chirag Gupta, Venkategowda Ramegowda, Supratim Basu, Andy Pereira
Software Mentions: 13
Published: about 3 years ago

10.1002/sim.8116

Correlation‐adjusted regression survival scores for high‐dimensional variable selection
Cited by: 10
Author(s): Thomas Welchowski, Verena Zuber, Matthias Schmid
Software Mentions: 11
Published: over 5 years ago

10.3389/fphys.2021.714195

Development and Validation of a Prediction Model for Elevated Arterial Stiffness in Chinese Patients With Diabetes Using Machine Learning
Cited by: 5
Author(s): Qingqing Li, Wenhui Xie, Liping Li, Lijing Wang, Qinyi You, Lu Chen, Jing Li, Yilang Ke, Jun Fang, Libin Liu, Huashan Hong
Software Mentions: 11
Published: about 3 years ago

10.1186/s12916-020-01595-w

Serum metabolite profiles are associated with the presence of advanced liver fibrosis in Chinese patients with chronic hepatitis B viral infection
Cited by: 30
Author(s): Guoxiang Xie, Xiaoning Wang, Runmin Wei, Jingye Wang, Aihua Zhao, Tianlu Chen, Yixing Wang, Hua Zhang, Zhun Xiao, Xin-Zhu Liu, Youping Deng, Linda L. Wong, Cynthia Rajani, Sandi A. Kwee, Hua Bian, Xin Gao, Ping Liu, Jia Wang
Software Mentions: 10
Published: over 4 years ago

10.1017/S0950268820000758

Development and external-validation of a nomogram for predicting the survival of hospitalised HIV/AIDS patients based on a large study cohort in western China
Cited by: 5
Author(s): Zongxiang Yuan, Bo Zhou, Sirun Meng, Jie Jiang, Shenghong Huang, Xiang Lu, Nianning Wu, Zhongkui Xie, Jianning Deng, X. Chen, J. Liu, J. Zhang, Fengyao Wu, Hao Liang, L. Ye
Software Mentions: 8
Published: over 4 years ago

10.3389/fmolb.2021.675198

A High Epigenetic Risk Score Shapes the Non-Inflamed Tumor Microenvironment in Breast Cancer
Cited by: 1
Author(s): Dong Zhang, Yingnan Wang, Qifeng Yang
Software Mentions: 8
Published: about 3 years ago

10.1093/bioinformatics/btz698

scds: computational annotation of doublets in single-cell RNA sequencing data
Cited by: 114
Author(s): Abha Bais, Dennis Kostka
Software Mentions: 7
Published: about 5 years ago

10.1186/s12870-018-1329-y

Distinct tissue-specific transcriptional regulation revealed by gene regulatory networks in maize
Cited by: 39
Author(s): Ji Huang, Jue-Fei Zheng, Hui Yuan, Karen M. McGinnis
Software Mentions: 5
Published: over 6 years ago

10.1038/s41598-018-33681-8

Pathogen Identification Direct From Polymicrobial Specimens Using Membrane Glycolipids
Cited by: 17
Author(s): William E. Fondrie, Tao Liang, Benjamin L. Oyler, Lisa M. Leung, Robert K. Ernst, Dudley K. Strickland, David R. Goodlett
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pcbi.1008735

From heterogeneous healthcare data to disease-specific biomarker networks: A hierarchical Bayesian network approach
Cited by: 9
Author(s): Ann‐Kristin Becker, Marcus Dörr, Stephan B. Felix, Fabian Frost, Hans J. Grabe, Markus M. Lerch, Matthias Nauck, Uwe Völker, Henry Völzke, Lars Kaderali
Software Mentions: 5
Published: over 3 years ago

10.1371/journal.pone.0237412

The impact of different negative training data on regulatory sequence predictions
Cited by: 3
Author(s): Louisa-Marie Krützfeldt, Max Schubach, Martin Kircher
Software Mentions: 5
Published: almost 4 years ago

10.3389/fgene.2021.670749

Multi-Omics Marker Analysis Enables Early Prediction of Breast Tumor Progression
Cited by: 5
Author(s): Haifeng Xu, Tonje G. Lien, Helga Bergholtz, Thomas Fleischer, Lounes Djerroudi, Anne Vincent‐Salomon, Thérese Sørlie, Tero Aittokallio
Software Mentions: 5
Published: over 3 years ago

10.3390/bioengineering8060085

Supervised Analysis for Phenotype Identification: The Case of Heart Failure Ejection Fraction Class
Cited by: 2
Author(s): Cristina López, Jose Luis Holgado, Raquel Cortés, Inma Sauri, Antonio Fernandez, José Miguel Calderón, Julio Núñez, Josep Redón
Software Mentions: 5
Published: about 3 years ago

10.1186/s13326-018-0189-6

Using predicate and provenance information from a knowledge graph for drug efficacy screening
Cited by: 16
Author(s): Wytze J. Vlietstra, Rein Vos, Anneke M. Sijbers, Erik M. van Mulligen, Jan A. Kors
Software Mentions: 5
Published: about 6 years ago

10.1098/rsob.200052

Bioinformatical dissection of fission yeast DNA replication origins
Cited by: 1
Author(s): Koji Masuda, Claire Renard-Guillet, Katsuhiko Shirahige, Takashi Sutani
Software Mentions: 4
Published: about 4 years ago

10.1093/bioinformatics/btw570

Precrec: fast and accurate precision–recall and ROC curve calculations in R
Cited by: 145
Author(s): Takaya Saito, Marc Rehmsmeier
Software Mentions: 4
Published: about 8 years ago

10.26508/lsa.201800098

An integrative machine learning approach for prediction of toxicity-related drug safety
Cited by: 38
Author(s): Artem Lysenko, Alok Sharma, Keith A. Boroevich, Tatsuhiko Tsunoda
Software Mentions: 4
Published: almost 6 years ago

10.3390/cancers13030430

Effective Prediction of Prostate Cancer Recurrence through the IQGAP1 Network
Cited by: 4
Author(s): Yan Gu, Xiaozeng Lin, Anil Kapoor, Taosha Li, Pierre Major, Damu Tang
Software Mentions: 4
Published: over 3 years ago

10.3390/cancers13174483

Prognostic and Therapeutic Potential of the OIP5 Network in Papillary Renal Cell Carcinoma
Cited by: 6
Author(s): Mathilda Jing Chow, Yan Gu, Lizhi He, Xiaozeng Lin, Ying Dong, Wenjuan Mei, Anil Kapoor, Damu Tang
Software Mentions: 4
Published: about 3 years ago

10.3390/jcm9061668

Using Machine Learning to Predict ICU Transfer in Hospitalized COVID-19 Patients
Cited by: 129
Author(s): Fu-Yuan Cheng, Himanshu Joshi, Pranai Tandon, Robert Freeman, David L. Reich, Madhu Mazumdar, Roopa Kohli‐Seth, Matthew A. Levin, Prem Timsina, Arash Kia
Software Mentions: 3
Published: over 4 years ago

10.7717/peerj.6304

Prioritizing bona fide bacterial small RNAs with machine learning classifiers
Cited by: 6
Author(s): Erik JJ Eppenhof, Lourdes Peña‐Castillo
Software Mentions: 3
Published: over 5 years ago

10.1016/j.ijcha.2021.100716

Update and, internal and temporal-validation of the FRANCE-2 and ACC-TAVI early-mortality prediction models for Transcatheter aortic Valve Implantation (TAVI) using data from the Netherlands heart registration (NHR)
Cited by: 5
Author(s): Hatem Al-Farra, Bas A.J.M. de Mol, Anita C.J. Ravelli, W. J. P. P. ter Burg, Saskia Houterman, José P.S. Henriques, Ameen Abu‐Hanna
Software Mentions: 3
Published: over 3 years ago

10.1186/s13062-016-0151-4

modPDZpep: a web resource for structure based analysis of human PDZ-mediated interaction networks
Cited by: 1
Author(s): Neetu Sain, Debasisa Mohanty
Software Mentions: 3
Published: almost 8 years ago

10.12688/f1000research.16200.2

Predicting transcription factor binding using ensemble random forest models
Cited by: 7
Author(s): Fatemeh Behjati Ardakani, Florian Schmidt, Marcel H. Schulz
Software Mentions: 3
Published: about 5 years ago

10.1186/s13059-018-1534-x

CRISPR-Cas9 off-targeting assessment with nucleic acid duplex energy parameters
Cited by: 94
Author(s): Ferhat Alkan, Anne Wenzel, Christian Anthon, Jakob Hull Havgaard, Jan Gorodkin
Software Mentions: 2
Published: almost 6 years ago

10.1038/s41598-019-52585-9

A Frailty Index based on clinical data to quantify mortality risk in dogs
Cited by: 27
Author(s): Tommaso Banzato, Giovanni Franzo, Roberta Di Maggio, Elisa Nicoletto, Silvia Burti, Matteo Cesari, Marco Canevelli
Software Mentions: 2
Published: almost 5 years ago

10.1038/s41598-020-72404-w

Identification of pathogenic missense mutations using protein stability predictors
Cited by: 51
Author(s): Lukas Gerasimavicius, Xin Liu, Joseph A. Marsh
Software Mentions: 2
Published: almost 4 years ago

10.3390/ijms19113609

Causal Transcription Regulatory Network Inference Using Enhancer Activity as a Causal Anchor
Cited by: 4
Author(s): Deepti Vipin, Lingfei Wang, Guillaume Devailly, Tom Michoel, Anagha Joshi
Software Mentions: 2
Published: almost 6 years ago

10.1186/s12936-020-3111-5

A panel of recombinant proteins from human-infective Plasmodium species for serological surveillance
Cited by: 9
Author(s): Nicole Müller-Sienerth, Jarrod Shilts, Khamisah Abdul Kadir, Victor Yman, Manijeh Vafa Homann, Muhammad Asghar, Billy Ngasala, Balbir Singh, Anna Färnert, Gavin J. Wright
Software Mentions: 1
Published: over 4 years ago

10.1093/bioinformatics/bty674

On the problem of confounders in modeling gene expression
Cited by: 10
Author(s): Florian Schmidt, Marcel H. Schulz
Software Mentions: 1
Published: about 6 years ago

10.3390/ph14010004

Improved Detection Criteria for Detecting Drug-Drug Interaction Signals Using the Proportional Reporting Ratio
Cited by: 6
Author(s): Yoshihiro Noguchi, Keisuke Aoyama, Satoaki Kubo, Tomoya Tachi, Hitomi Teramachi
Software Mentions: 1
Published: over 3 years ago

10.1038/s41398-019-0485-7

Alzheimer’s disease polygenic risk score as a predictor of conversion from mild-cognitive impairment
Cited by: 61
Author(s): Sultan Chaudhury, Keeley Brookes, Tulsi Patel, Abigail Fallows, Tamar Guetta-Baranés, James Turton, Rita Guerreiro, José Brás, John Hardy, Paul T. Francis, Rebecca Croucher, Clive Holmes, Kevin Morgan
Software Mentions: 1
Published: over 5 years ago

Ecosyste.ms: Papers

Projects: cran: PRROC

Papers Mentioning PRROC 35