Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0195112

https://doi.org/10.1371/journal.pone.0195112

Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats

Cited by: 43
Author(s): Edna Chiang, Marian L. Schmidt, Michelle A. Berry, Bopaiah A. Biddanda, Ashley M. Burtner, Thomas H. Johengen, Danna Palladino, Vincent J. Denef
Published: over 6 years ago

Software Mentions 16

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: geiger
Analysis of Evolutionary Diversification
Papers that mentioned: 179
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: lattice
Trellis Graphics for R
Papers that mentioned: 251
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: pgirmess
Spatial Analysis and Data Mining for Field Ecologists
Papers that mentioned: 148
cran: phangorn
Phylogenetic Reconstruction and Analysis
Papers that mentioned: 192
cran: picante
Integrating Phylogenies and Ecology
Papers that mentioned: 414
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: geiger
A radiation detection utility package
Papers that mentioned: 179
pypi: lattice
A framework for developing data models, including schema development and documentation.
Papers that mentioned: 251
pypi: lm
End to End Language Model Pipeline built for training speed
Papers that mentioned: 267
pypi: Silva
Silva Content Management System
Papers that mentioned: 445
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
pypi: xyplot
Plotting with python made easy
Papers that mentioned: 6